The detailed information of tRNA gene sequence


Sequence ID>SRA1002677
Genome IDSRR001663.351500
Search identical group
Phylum/ClassSynechococcus metagenome reveals major roles for horizontal gene transfer and plasmids in population diversity (SRP000219)
Species
Start position on genome 26
End posion on genome 101
Amino Acid Trp
Anticodon CCA
Upstream region at tRNA start position
agctctatat
tRNA gene sequence
AGGAGTGTAGCTCAATTGGTAGAGCGCCGGTCTCCAAAACCGGAGGCTGAGGGTTCGAGT
CCCTCCGCTCCTGCCA
Downstream region at tRNA end position
attannnnnn
Secondary structure (Cloverleaf model)
>SRA1002677	Trp	CCA
                   t      GCCA attannnnnn
                     A - T
                     G - C
                     G - C
                     A - T
                     G - C
                     T + G
                     G - C          T G
                    T     C T C C C     A
      T A A        A      | | | | |     G
    T       C T C G       G A G G G     C
    G       | | | |                 T T
    G       G A G C
      T A          G     AGGCT
                    C - G
                    C - G
                    G - C
                    G - C
                    T - A
                  C       A
                  T       A
                    C C A
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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