The detailed information of tRNA gene sequence


Sequence ID>SRA1004174
Genome IDSRR002328.184097
Search identical group
Phylum/ClassThe Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
Species
Start position on genome 291
End posion on genome 202
Amino Acid Ser
Anticodon GCT
Upstream region at tRNA start position 
agagaaagga
tRNA gene sequence 
GGTGAGGTGGATGAGCGGCTGAAATCAGTAGTTTGCTAAACTGCCGTACGGGTTAAACTG
TACCAAGGGTTCGAATCCCTTCCTCACCGCtc
Downstream region at tRNA end position 
acaagttctt
Secondary structure (Cloverleaf model)
>SRA1004174	Ser	GCT
                   a      GCtc acaagttctt
                     G - C
                     G - C
                     T - A
                     G - C
                     A - T
                     G - C
                     G - C          T A
                    T     T T C C C     A
      C G A        G      | | | | |     G
    G       G T A G       A A G G G     C
    G         | | |                 T T
    C       A A T C
      T G A        A     CGTACGGGTTAAACTGTACC
                    G - C
                    T + G
                    A - T
                    G - C
                    T - A
                  T       A
                  T       A
                    G C T
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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