The detailed information of tRNA gene sequence


Sequence ID>SRA1005419
Genome IDSRR013519.13559
Search identical group
Phylum/ClassViral metagenome of the Antarctic Lake Limnopolar in spring and summer? (SRP000593)
Species
Start position on genome 134
End posion on genome 45
Amino Acid Ser
Anticodon GCT
Upstream region at tRNA start position 
agagaagttt
tRNA gene sequence 
GGAGACGTCGCATAGCCCGGTCGAGTGCGCCTCACTGCTAACGAGGTAAGGGGTTAAACC
CTTCAGGAGTTCAAATCTCCTCGTCTCCGCtc
Downstream region at tRNA end position 
ttatctagcg
Secondary structure (Cloverleaf model)
>SRA1005419	Ser	GCT
                   t      GCtc ttatctagcg
                     G - C
                     G - C
                     A - T
                     G - C
                     A - T
                     C - G
                     G - C          T A
                    T     T C C T C     A
    C C G A        C      | | | | |     A
  C         T A C G       A G G A G     C
  G         + | | |                 T T
  G         G T G C
    T C G A        G     TAAGGGGTTAAACCCTTC
                    C - G
                    C - G
                    T - A
                    C - G
                    A   C
                  C       A
                  T       A
                    G C T
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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