The detailed information of tRNA gene sequence


Sequence ID>SRA1008182
Genome IDSRR020490.242164
Search identical group
Phylum/ClassMicrobial community gene content and expression in the Central North Pacific Gyre, Station ALOHA, HOT186 (SRP001041)
Species
Start position on genome 106
End posion on genome 17
Amino Acid Ser
Anticodon GCT
Upstream region at tRNA start position 
ctaattatat
tRNA gene sequence 
GGAGAGGTGGCCGAGTGGTCGAAGGCGCTCCCCTGCTAAGGGAGTATGCGGGCAACCGTA
TCGAGGGTTCGAATCCCTCTCTCTCCGCCA
Downstream region at tRNA end position 
tatattgaca
Secondary structure (Cloverleaf model)
>SRA1008182	Ser	GCT
                   t      GCCA tatattgaca
                     G - C
                     G - C
                     A - T
                     G - C
                     A - T
                     G - C
                     G + T          T A
                    T     C T C C C     A
      T G A        G      | | | | |     G
    G       G C C G       G A G G G     C
    G         | | |                 T T
    T       A G G C
      C G A        G     TATGCGGGCAACCGTATC
                    C - G
                    T - A
                    C - G
                    C - G
                    C - G
                  C       A
                  T       A
                    G C T
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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