The detailed information of tRNA gene sequence


Sequence ID>SRA1009269
Genome IDSRR020491.172131
Search identical group
Phylum/ClassMicrobial community gene content and expression in the Central North Pacific Gyre, Station ALOHA, HOT186 (SRP001041)
Species
Start position on genome 85
End posion on genome 179
Amino Acid SeC
Anticodon TCA
Upstream region at tRNA start position 
aacggcatgt
tRNA gene sequence 
GGAAGGGAAGCAGTGCCGGTGTGCTGGCTGGTCTTCAAAACCAGTGAAGGCCGTAAGACG
GTCTTAGTGGGTTCGACTCCCACTCTCTTCCGCCA
Downstream region at tRNA end position 
aacctctaaa
Secondary structure (Cloverleaf model)
>SRA1009269	SeC	TCA
                   t      GCCA aacctctaaa
                     G - C
                     G - C
                     A - T
                     A - T
                     G - C
                     G + T
                     G - C
                     A - T          T C
                    A     C A C C C     A
      C C G        G      | | | | |     G
    G       T G A C       G T G G G     C
    G       + | | |                 T T
    T       G C T G
      G T          G     TGAAGGCCGTAAGACGGTCTTA
                    C - G
                    T - A
                    G - C
                    G - C
                    T - A
                  C       A
                  T       A
                    T C A
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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