The detailed information of tRNA gene sequence


Sequence ID>SRA1010879
Genome IDSRR020492.201410
Search identical group
Phylum/ClassMicrobial community gene content and expression in the Central North Pacific Gyre, Station ALOHA, HOT186 (SRP001041)
Species
Start position on genome 211
End posion on genome 301
Amino Acid Ser
Anticodon GGA
Upstream region at tRNA start position 
aaataattaa
tRNA gene sequence 
GGAGAGATGGCCGAGTGGTTTTAAGGCGCACGCTTGGAAAGTGTGTGTACCCTCACAGGT
ACCGTGGGTTCGAATCCCACTCTCTCCGCCA
Downstream region at tRNA end position 
ttaattttaa
Secondary structure (Cloverleaf model)
>SRA1010879	Ser	GGA
                   a      GCCA ttaattttaa
                     G - C
                     G - C
                     A - T
                     G - C
                     A - T
                     G - C
                     A - T          T A
                    T     C A C C C     A
    G T G A        G      | | | | |     G
  G         G C C G       G T G G G     C
  T           | | |                 T T
  T         A G G C
    T T A          G     TGTACCCTCACAGGTACC
                    C - G
                    A - T
                    C - G
                    G + T
                    C - G
                  T       A
                  T       A
                    G G A
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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