The detailed information of tRNA gene sequence


Sequence ID>SRA1013460
Genome IDSRR023396.71542
Search identical group
Phylum/ClassBrazos-Trinity Basin Sediment Metagenome: IODP Site 1320 (SRP001095)
Species
Start position on genome 105
End posion on genome 19
Amino Acid Ser
Anticodon GGA
Upstream region at tRNA start position 
tctataatgt
tRNA gene sequence 
GGAGAGGTGCTGGAGTGGCCTATCAGGCGCGCCTGGAGAGCGCGTGTCGGGTTTCCCGAC
CGTGGGTTCGAATCCCACCCTCTCCGCtc
Downstream region at tRNA end position 
tgctttcttt
Secondary structure (Cloverleaf model)
>SRA1013460	Ser	GGA
                   t      GCtc tgctttcttt
                     G - C
                     G - C
                     A - T
                     G - C
                     A - T
                     G - C
                     G - C          T A
                    T     C A C C C     A
      T G A        G      | | | | |     G
    G       G G T C       G T G G G     C
    G       + | | |                 T T
    C       T C A G
      C T A        G     TGTCGGGTTTCCCGACC
                    C - G
                    G - C
                    C - G
                    G - C
                    C - G
                  C       A
                  T       G
                    G G A
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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