The detailed information of tRNA gene sequence


Sequence ID>SRA1013484
Genome IDSRR023396.97281
Search identical group
Phylum/ClassBrazos-Trinity Basin Sediment Metagenome: IODP Site 1320 (SRP001095)
Species
Start position on genome 85
End posion on genome 173
Amino Acid Ser
Anticodon CGA
Upstream region at tRNA start position 
ttaagaggtg
tRNA gene sequence 
GGAGAGGTGTCCGAGTGGTTTATGGTGCCGCTCTCGAAAAGCGGTCTCGCCTTTGGCGAG
CGTGGGTTCGAATCCCACCCTCTCCGCCA
Downstream region at tRNA end position 
atttagaaat
Secondary structure (Cloverleaf model)
>SRA1013484	Ser	CGA
                   g      GCCA atttagaaat
                     G - C
                     G - C
                     A - T
                     G - C
                     A - T
                     G - C
                     G - C          T A
                    T     C A C C C     A
      T G A        G      | | | | |     G
    G       G C C T       G T G G G     C
    G       + | |                   T T
    T       T G G T
      T T A        G     TCTCGCCTTTGGCGAGC
                    C - G
                    C - G
                    G - C
                    C - G
                    T - A
                  C       A
                  T       A
                    C G A
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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