The detailed information of tRNA gene sequence


Sequence ID>SRA1013550
Genome IDSRR023396.194872
Search identical group
Phylum/ClassBrazos-Trinity Basin Sediment Metagenome: IODP Site 1320 (SRP001095)
Species
Start position on genome 175
End posion on genome 86
Amino Acid Ser
Anticodon TGA
Upstream region at tRNA start position 
cataaagtca
tRNA gene sequence 
GGAGGGGTGTCCGAGTGGCCTATGGAGGCGGTCTTGAAAACCGTTGTCGTCGCAAGACGA
CCGTGGGTTCGAATCCCACCCCCTCCGCCA
Downstream region at tRNA end position 
tttactaggg
Secondary structure (Cloverleaf model)
>SRA1013550	Ser	TGA
                   a      GCCA tttactaggg
                     G - C
                     G - C
                     A - T
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     C A C C C     A
      T G A        G      | | | | |     G
    G       G C C T       G T G G G     C
    G       + | | |                 T T
    C       T G G A
      C T A        G     TGTCGTCGCAAGACGACC
                    G + T
                    C - G
                    G - C
                    G - C
                    T - A
                  C       A
                  T       A
                    T G A
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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