The detailed information of tRNA gene sequence


Sequence ID>SRA1013579
Genome IDSRR023396.238636
Search identical group
Phylum/ClassBrazos-Trinity Basin Sediment Metagenome: IODP Site 1320 (SRP001095)
Species
Start position on genome 189
End posion on genome 114
Amino Acid Cys
Anticodon GCA
Upstream region at tRNA start position 
gatggaaaag
tRNA gene sequence 
GACGCGGTACCCAAGTGGCTAAGGGAGAGGTCTGCAAAACCTTGATTCGTCGGTTCGAAT
CCGACCCGCGCCTCCA
Downstream region at tRNA end position 
cagcttaaat
Secondary structure (Cloverleaf model)
>SRA1013579	Cys	GCA
                   g      TCCA cagcttaaat
                     G - C
                     A   C
                     C - G
                     G - C
                     C - G
                     G - C
                     G - C          T A
                    T     C A G C C     A
      T G A        A      | | | | |     G
    G       A C C C       G T C G G     C
    G         | | |                 T T
    C       A G G G
      T A          A     GATTC
                    G + T
                    A - T
                    G - C
                    G - C
                    T - A
                  C       A
                  T       A
                    G C A
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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