The detailed information of tRNA gene sequence


Sequence ID>SRA1013615
Genome IDSRR023396.301446
Search identical group
Phylum/ClassBrazos-Trinity Basin Sediment Metagenome: IODP Site 1320 (SRP001095)
Species
Start position on genome 118
End posion on genome 193
Amino Acid Ala
Anticodon GGC
Upstream region at tRNA start position 
gagtgtgttt
tRNA gene sequence 
GGGCGGGTAGATCAGCTTGGAATGATCGCCACGTTGGCATCGTGGAGGTCGCGGGTTCAA
ATCCCGCCCCGTCCACtc
Downstream region at tRNA end position 
tactttcttt
Secondary structure (Cloverleaf model)
>SRA1013615	Ala	GGC
                   t      ACtc tactttcttt
                     G - C
                     G - C
                     G + T
                     C - G
                     G - C
                     G - C
                     G - C          T A
                    T     C G C C C     A
    T C G A        A      | | | | |     A
  T         C T A G       G C G G G     C
  G         | | | |                 T T
  G         G A T C
    A A T          G     AGGTC
                    C - G
                    C - G
                    A - T
                    C - G
                    G - C
                  T       T
                  T       A
                    G G C
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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