The detailed information of tRNA gene sequence


Sequence ID>SRA1016232
Genome IDSRR023846.410339
Search identical group
Phylum/ClassCommunity proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
Species
Start position on genome 119
End posion on genome 43
Amino Acid Trp
Anticodon CCA
Upstream region at tRNA start position 
caacaccctt
tRNA gene sequence 
GCGGTCGTAGCCCAACCGGATACGGCGCCGACCTCCAAAGTCGGACATTGCAGGTTCGAG
TCCTGTCGACCGTGCCA
Downstream region at tRNA end position 
tcccgggagg
Secondary structure (Cloverleaf model)
>SRA1016232	Trp	CCA
                   t      GCCA tcccgggagg
                     G + T
                     C - G
                     G - C
                     G - C
                     T - A
                     C - G
                     G - C          T G
                    T     T G T C C     A
      C A A        A      + | | | |     G
    C       C C C G       G C A G G     C
    G         | | |                 T T
    G       C G G C
      A T A        G     ACATT
                    C - G
                    C - G
                    G - C
                    A - T
                    C - G
                  C       A
                  T       A
                    C C A
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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