The detailed information of tRNA gene sequence


Sequence ID>SRA1054378
Genome IDSRR035099.118832
Search identical group
Phylum/Class454 Sequencing (SRP001820)
Species
Start position on genome 379
End posion on genome 282
Amino Acid SeC
Anticodon TCA
Upstream region at tRNA start position 
accatgttgt
tRNA gene sequence 
GGAAGTGGATAGTGCACTGGTGGCGCTCCCGGACTTCAAATCCGGTGTAGCGGGTTAATA
GCTCGCTAGGTGAGTTCGATTCTCATGCACTTCCGCCA
Downstream region at tRNA end position 
ctcttttatg
Secondary structure (Cloverleaf model)
>SRA1054378	SeC	TCA
                   t      GCCA ctcttttatg
                     G - C
                     G - C
                     A - T
                     A - T
                     G - C
                     T - A
                     G - C
                     G   G          T T
                    A     T A C T C     A
      C A C        T      + | | | |     G
    T       G T G A       G T G A G     C
    G       | + | |                 T T
    G       C G C T
      T G G        C     TGTAGCGGGTTAATAGCTCGCTAG
                    C - G
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A
                    T C A
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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