The detailed information of tRNA gene sequence


Sequence ID>FG090800046
Genome IDAE017350
Search identical group
Phylum/ClassBasidiomycota
SpeciesCryptococcus neoformans var. neoformans JEC21
Chromosome chr10
Start position on genome 120117
End posion on genome 120021
Amino Acid Glu
Anticodon CTC
Upstream region at tRNA start position 
aagctgcttccgtatcttttacattccttgataaatggtgaatcaggagacctacataaattgcatatgttaatttcctttcgaaatatttcaacaagtg
tRNA gene sequence 
TCTTCATTAGTATAACGGTTAGTATAACCGCTTCTCACGCGGTAGACCAGGGTTCAACTC
CCTGATGGAGAAtta
Downstream region at tRNA end position 
ctttttgtactttttattgactctagcataccaataggaagttgtgtaagggcaaaagagctttttgagagcaaaacaaagcagcaattttttttccgat
Secondary structure (Cloverleaf model)
>FG090800046	Glu	CTC
                   g      Atta ctttttgtactttttattgactctagcataccaataggaagttgtgtaagggcaaaagagctttttgagagcaaaacaaagcagcaattttttttccgat
                     T - A
                     C - G
                     T - A
                     T + G
                     C - G
                     A - T
                     T - A          T C
                    T     G T C C C     A
      C A A        A      | | | | |     A
    G       T A T G       C A G G G     C
    G       + | | +                 T T
    T       G T A T
      T A          A     AGAC
                    A - T
                    C - G
                    C - G
                    G - C
                    C - G
                  T       C
                  T       A *
                    C T C
intron: position=38, length=25 (in A-loop)
ATGATTGGATTTATCCAGTTTTGTT
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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