The detailed information of tRNA gene sequence


Sequence ID>FG090800048
Genome IDAE017350
Search identical group
Phylum/ClassBasidiomycota
SpeciesCryptococcus neoformans var. neoformans JEC21
Chromosome chr10
Start position on genome 27134
End posion on genome 27045
Amino Acid Arg
Anticodon TCG
Upstream region at tRNA start position 
tccagcctataagccacgtgggcggacttaaaaggggtgtggcacggatcactagaagtgaaatatatgagtagttcaaaaagccaattaatattgtcaa
tRNA gene sequence 
GGGCTTGTGTTGCAGTGGTAGCATTCTAGACTTCGAATCTAGCGGTCGCGGGTTCAAATC
CCGTCGAGCCTTgac
Downstream region at tRNA end position 
tttttggttttgttgatcctttgctccgatcacgtgacgttctgcaaaagttgcttctctcgctgctgctgtccttttcgaattcctacaacctttctac
Secondary structure (Cloverleaf model)
>FG090800048	Arg	TCG
                   a      Tgac tttttggttttgttgatcctttgctccgatcacgtgacgttctgcaaaagttgcttctctcgctgctgctgtccttttcgaattcctacaacctttctac
                     G + T
                     G - C
                     G - C
                     C - G
                     T - A
                     T + G
                     G - C          T A
                    T     T G C C C     A
        G A        G      + | | | |     A
      T     C G T T       G C G G G     C
      G     | | |                   T T
      G     G C A T
        T A        T     CGGTC
                    C - G
                    T - A
                    A - T
                    G - C
                    A - T
                  C       A
                  T       A *
                    T C G
intron: position=38, length=18 (in A-loop)
GGTCGTGAACTGGAGTTT
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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