The detailed information of tRNA gene sequence


Sequence ID>FU090900079
Genome IDAE017350
Search identical group
Phylum/ClassBasidiomycota
SpeciesCryptococcus neoformans var. neoformans JEC21
Chromosome chr10
Start position on genome 639486
End posion on genome 639601
Amino Acid Arg
Anticodon ACG
Upstream region at tRNA start position 
aaatgacaatcttcattcttcgtaaggatgaaatgtggaggttgttgattttctaagcattacatcgatatataaaagaggatttcgaaaaaaggagtaa
tRNA gene sequence 
GTCCGCGTAGCACAGTGGTAGTGCGCTTGACTACGAATCAAGAGGTCGCGATTTCGAATA
TCGCCGTGGATTgtt
Downstream region at tRNA end position 
tctttttgatcatttctgatgaagcagctctcggatcaatacgatttgtcttggagctccaatgctcgcaattcaccataagctgctttcctttttcttc
Secondary structure (Cloverleaf model)
>FU090900079	Arg	ACG
                   a      Tgtt tctttttgatcatttctgatgaagcagctctcggatcaatacgatttgtcttggagctccaatgctcgcaattcaccataagctgctttcctttttcttc
                     G + T
                     T - A
                     C - G
                     C - G
                     G + T
                     C - G
                     G - C          T A
                    T     C G C T A     A
        G A        A      | | | | |     G
      T     C A C G       G C G A T     C
      G     | | | |                 T T
      G     G T G C
        T A        G     AGGTC
                    C - G
                    T - A
                    T - A
                    G - C
                    A - T
                  C       A
                  T       A *
                    A C G
intron: position=38, length=44 (in A-loop)
TTACGTTGGCATATTTTGCTTTAGCAGGTGTGCTTAGGGTCTGA
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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