The detailed information of tRNA gene sequence


Sequence ID>FU090900166
Genome IDCM000437
Search identical group
Phylum/ClassAscomycota
SpeciesPichia stipitis CBS 6054
Chromosome ch1
Start position on genome 1344360
End posion on genome 1344260
Amino Acid Lys
Anticodon TTT
Upstream region at tRNA start position 
aaagtttttatatattgcggtagagatcttgtatgcggtatggatgttttctaaaagtgactgtataatgaaaggtacacgaaactctcgaaactttttc
tRNA gene sequence 
GCCTGGCTAGCTCAATGGCTAGAGCGTTTGACTTTTAATCAAAAGGTTGCGGGTTCGACC
CCCGCGTCGGGCTttt
Downstream region at tRNA end position 
cttttttatcaactggttgatatatatcaagagcagagcctttccttttttactaatctagatagctattagaattttgtgatctctgaaaccgacacta
Secondary structure (Cloverleaf model)
>FU090900166	Lys	TTT
                   c      Tttt cttttttatcaactggttgatatatatcaagagcagagcctttccttttttactaatctagatagctattagaattttgtgatctctgaaaccgacacta
                     G - C
                     C - G
                     C - G
                     T + G
                     G - C
                     G + T
                     C - G          C C
                    T     C G C C C     A
      T A A        A      | | | | |     G
    G       C T C G       G C G G G     C
    G       | | | |                 T T
    C       G A G C
      T A          G     AGGTT
                    T - A
                    T - A
                    T - A
                    G - C
                    A - T
                  C       A
                  T       A *
                    T T T
intron: position=38, length=28 (in A-loop)
TAATCGCATTTTGTATGATTTTAAAGGT
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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