The detailed information of tRNA gene sequence


Sequence ID>FU090900182
Genome IDCP000500
Search identical group
Phylum/ClassAscomycota
SpeciesPichia stipitis CBS 6054
Chromosome chr6
Start position on genome 97309
End posion on genome 97217
Amino Acid Pro
Anticodon AGG
Upstream region at tRNA start position 
gatcattatgtcaaatcctttttcaaaatcctgtatatagtcatttcacgtgatttgttgaacatacctaggaaaaaaactatttgtagaacatctaatc
tRNA gene sequence 
GGGCATGTGGTCTAGTGGTATGATTCTCGCTTAGGGTGCGGGAGGTCCCGGGTTCAATTC
CCGGCCTGCCCCaac
Downstream region at tRNA end position 
ttcgttgatttttttcttctattttttgcacctattattattgtatggaagaggtaaatatggagataaatcgctaattttttagaaaacagtagtcttc
Secondary structure (Cloverleaf model)
>FU090900182	Pro	AGG
                   c      Caac ttcgttgatttttttcttctattttttgcacctattattattgtatggaagaggtaaatatggagataaatcgctaattttttagaaaacagtagtcttc
                     G - C
                     G - C
                     G - C
                     C - G
                     A - T
                     T   C
                     G - C          T T
                    T     G G C C C     A
        G A        G      | | | | |     A
      T     T C T G       C C G G G     C
      G       | | +                 T T
      G     T G A T
        T A        T     AGGTC
                    C - G
                    T + G
                    C - G
                    G - C
                    C - G
                  T       T
                  T       G *
                    A G G
intron: position=38, length=21 (in A-loop)
TTTGACTTGTCAAAACTAATA
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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