The detailed information of tRNA gene sequence


Sequence ID>FU090900322
Genome IDCR382132
Search identical group
Phylum/ClassAscomycota
SpeciesYarrowia lipolytica CLIB122
Chromosome chrF
Start position on genome 215603
End posion on genome 215711
Amino Acid Leu
Anticodon CAA
Upstream region at tRNA start position 
aaaaatggggggagaacgttaaattattacttattggggtaattatccctagccctaaagttgttgtcctggatgttcaaattttgaagaaaaatagccc
tRNA gene sequence 
GTCAATTTGGCCGAGTGGTCTAAGGCGTCCGACTCAAGTTCGGATCTCGCAAGAGGCGAG
GGTTCGAATCCCTCAGTTGACAtaa
Downstream region at tRNA end position 
ttttttttctcctagtaaactcacttttgaatcaaaagaacttccatcgatccatatttttctttccaaagaccttcaattcttacaagtactgtccaat
Secondary structure (Cloverleaf model)
>FU090900322	Leu	CAA
                   c      Ataa ttttttttctcctagtaaactcacttttgaatcaaaagaacttccatcgatccatatttttctttccaaagaccttcaattcttacaagtactgtccaat
                     G - C
                     T - A
                     C - G
                     A - T
                     A - T
                     T + G
                     T - A          T A
                    T     C T C C C     A
      T G A        G      | | | | |     G
    G       G C C G       G A G G G     C
    G         | | |                 T T
    T       A G G C
      C T A        G     TCTCGCAAGAGGC
                    T - A
                    C - G
                    C - G
                    G - C
                    A - T
                  C       T
                  T       G *
                    C A A
intron: position=38, length=27 (in A-loop)
TGTAAGCTTAGCAAGAGAAATCTAGCT
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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