The detailed information of tRNA gene sequence


Sequence ID>FG091800018
Genome IDAE017344
Search identical group
Phylum/ClassBasidiomycota
SpeciesCryptococcus neoformans var. neoformans JEC21
Chromosome chr4
Start position on genome 1477071
End posion on genome 1476972
Amino Acid Arg
Anticodon CCT
Upstream region at tRNA start position 
tatcgcgtcgcgcttttgttgacatctacaagtttcagcaccgttcaggataagttatttgtttatgtatggaaacggaaatgagttccggcattatttA
tRNA gene sequence 
GCCGGCGTGGCCAAATGGTTACGGCGTCCGCTTCCTAAGCGGGAGATTGTGGGTTCGATC
CCCACCGTTGGTTTtt
Downstream region at tRNA end position 
tttttttctctcttcagagagaagaagatgcatttatttttcgtgcatgccgcgaccaccacgcatgcaatgaggggtcgcgtttactaaattatgcatg
Secondary structure (Cloverleaf model)
>FG091800018	Arg	CCT
                   A      TTtt tttttttctctcttcagagagaagaagatgcatttatttttcgtgcatgccgcgaccaccacgcatgcaatgaggggtcgcgtttactaaattatgcatg
                     G + T
                     C - G
                     C - G
                     G + T
                     G + T
                     C - G
                     G - C          C T
                    T     C A C C C     A
      T A A        G      | | | | |     G
    G       A C C G       G T G G G     C
    G         | | |                 T T
    T       C G G C
      T A          G     AGATT
                    T + G
                    C - G
                    C - G
                    G - C
                    C - G
                  T       A
                  T       A *
                    C C T
intron: position=38, length=25 (in A-loop)
TTAAATGATTTTAAAATCAGCCGGT
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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