The detailed information of tRNA gene sequence


Sequence ID>FG091900216
Genome IDAE017348
Search identical group
Phylum/ClassBasidiomycota
SpeciesCryptococcus neoformans var. neoformans JEC21
Chromosome chr8
Start position on genome 1099913
End posion on genome 1099819
Amino Acid Ser
Anticodon AGA
Upstream region at tRNA start position 
cgctacttctgtcgtcgtcaggggttgcaggtaagtggcgaaatttacgtaacacatgtaacaggatctataaatgagacttttttgaatttcaaccgtt
tRNA gene sequence 
GGAGTAGTGCGACAGTGGTTACTCGGTTCGATTAGAAATCGAATGCCGTCAGGCGCGCAG
GTTCGAGTCCTGCCTGCTCCTttc
Downstream region at tRNA end position 
ttttttgcttctaacctaacccttcgcaacttttatagtaacctcaaatatgttgtaagccactgctcttaatcctgcttatgagaatcatgacagtcta
Secondary structure (Cloverleaf model)
>FG091900216	Ser	AGA
                   t      Tttc ttttttgcttctaacctaacccttcgcaacttttatagtaacctcaaatatgttgtaagccactgctcttaatcctgcttatgagaatcatgacagtcta
                     G - C
                     G - C
                     A - T
                     G - C
                     T + G
                     A - T
                     G - C          T G
                    T     C G T C C     A
      T G A        G      | | | | |     G
    G       C A G C       G C A G G     C
    G         | | |                 T T
    T       C T C G
      T A          G     TGCCGTCAGGCGC
                    T - A
                    T - A
                    C - G
                    G - C
                    A - T
                  T       A
                  T       A *
                    A G A
intron: position=38, length=14 (in A-loop)
TTTAGAAATTCCTC
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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