The detailed information of tRNA gene sequence


Sequence ID>FG091900218
Genome IDCP000496
Search identical group
Phylum/ClassAscomycota
SpeciesPichia stipitis CBS 6054
Chromosome chr2
Start position on genome 2458058
End posion on genome 2458179
Amino Acid Ile
Anticodon TAT
Upstream region at tRNA start position 
tataggtcatatccttggaaaactgtaaaaatgccacaatatggtagcgcagaaaaagacaagacgtctgggaaaaatgcttaggtttatgacgcaaggt
tRNA gene sequence 
GCTCCAGTGGCGCAGAGGTTAGCGCTTCGTGCTTATAACGCGACGGTCGTGGGTTCAAAC
CCCTCCTGGAGCAttt
Downstream region at tRNA end position 
tgtcttttcttatttttttgaatttttaagtgacattaagatggtagatggtagtaaatagtaaacactatccctagaagtatccgcattctagtgatat
Secondary structure (Cloverleaf model)
>FG091900218	Ile	TAT
                   t      Attt tgtcttttcttatttttttgaatttttaagtgacattaagatggtagatggtagtaaatagtaaacactatccctagaagtatccgcattctagtgatat
                     G - C
                     C - G
                     T - A
                     C - G
                     C - G
                     A - T
                     G - C          C A
                    T     C T C C C     A
      A G A        G      |   | | |     A
    G       C G C G       G T G G G     C
    G       | | | |                 T T
    T       G C G C
      T A          T     CGGTC
                    T - A
                    C - G
                    G - C
                    T + G
                    G - C
                  C       A
                  T       A *
                    T A T
intron: position=38, length=49 (in A-loop)
GCCGTGTTACGACGATATGGTTATACCATAAGTCACGGTCGTGTGAGGA
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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