The detailed information of tRNA gene sequence


Sequence ID>CHL090800015
Genome IDAE009947
Search identical group
Phylum/ClassViridiplantae
SpeciesSaccharum hybrid cultivar SP-80-3280
Start position on genome 65565
End posion on genome 63014
Amino Acid Lys
Anticodon TTT
Upstream region at tRNA start position 
tattttatcT
tRNA gene sequence 
GGGTTGCTAACTCAATGGTAGAGTACTCGGCTTTTAACCGACTAGTTCCGGGTTCGAGTC
CCGGGCAACCCATat
Downstream region at tRNA end position 
ggaaaataga
Secondary structure (Cloverleaf model)
>CHL090800015	Lys	TTT
                   T      ATat ggaaaataga
                     G - C
                     G - C
                     G - C
                     T - A
                     T - A
                     G - C
                     C - G          T G
                    T     G G C C C     A
        A A        A      | | | | |     G
      T     C T C A       C C G G G     C
      G     | | | |                 T T
      G     G A G T
        T A        A     TAGTT
                    C   C
                    T - A
                    C - G
                    G - C
                    G - C
                  C       A *
                  T       A
                    T T T
intron: position=39, length=2478 (in A-loop)
GTGCGGCTATGATCTTTTACACATTTGGATGAAGCAACAAATTCGTCCAGACTCTTGGTAGAGTCTAGAA
GACCACGACTGATCCTCAAAGGTAATGAATGGAAAAAATAGCATGTCGTAATAAAATCAATTTCTTTTTT
TTTTTTTTTAATCAAAAAATTCTGATTTTCTGGGTCTAGTGAATAAATGGATAGAGCCTGGCTCTAATTC
TGGTAAAATAAAAAAAAAGCAACGAGCTTAACTTCTTAATTGGTTAATTGGAAGGATTCCCCGATCTAAT
TAGACGTTAAAAATAGATTAGTGCCTAATGCAGGGAAAGGTTAGGTTTTCCTATGAGTGGACCCTTTACT
TTTTTTTTAGAAATCCTAATTATTCTTGATTATGGATTGAAAAGGGATGTTATGACTTGAATGTGTAAAA
GAAACAGTATATTGATAAAGAGACTGTATTCCAAAGTCAAAAGAGCGATTGGCCTGCAAAAATAAAAGAT
TTGTTCTTGTTTGTTTTGTAATTAGAACAAACATAAACTAATTAGATAGAAAAGGAGCGGAAAAAGTTCT
ATGGATTAGACTCCCTTTCTTTCCTGGGTTTGTATTATGCAACACCTTGTTCTGACCATATTGCACTATG
TATCATCATTTGATAAACCGAGAAATGCTTTTTTCTCTGATTCAAGTAGAAATACAAATGCAAAAATTCG
AAGGGTATTCAGAAAAACAGAAATCTCGTCAACACTACTTCGTCTACCCACTTCTCTTTCAGGAATATAT
TTATGCATTTGCTCATGATTATGGATTAAATGGTTCCGAACCTGTGGAAATTTTTGGTTGTAATAACAAG
AAATTTAGTTCAATACTTGTGAAACGTTTAATTATTCGAATGTATCAGCAGAATTTTTTGATTAATTCGG
TTAATTATCCTAACCAAGATCGATTGTTTGATCACCGCAATTATTTTTATTCTGAGTTTTATTCTCAGAT
TCTATCTGAGGGGTTTGGGATTGTTGTAGAAATCCCACTCTCGCTAGGGCAACTATCTTGTCCAGAAGAA
AAAGAAATACCAAAGTTTCAAAATTTACAATCTATTCATTCAATATTTCCCTTTTTAGAAGACAAATTTT
TGCATTTACATTATCTATCACATATAGAAATACCCTATCCTATCCATTTAGAAATCCTGGTTCAACTCCT
TGAATACCGGATTCAAGATGTTCCCTCTTTGCATTTATTGCGATTCTTTCTCCACTATTATTCGAATTGG
AATAGTCTTATTACTTCAATGAAATCCATTTTTCTTTTGAAAAAAGAAAATCAAAGACTATTTCGATTCC
TATATAACTCTTATGTATCAGAATATGAATTTTTCTTGTTGTTTCTTCGTAAACAATCTTCTTGCTTACG
ATTAACATCTTCTGGAACCTTTCTGGAACGAATCATCTTTTCTGGGAAGATGGAACATTTTGGTGTAATG
TACCCGGGGTTTTTTCGGAAAACCATATGGTTCTTTATGGATCCTCTTATGCATTATGTTCGATATCAAG
GAAAGGCAATTCTTGCATCAAAAGGCACTCTTCTTTTGAAGAAGAAATGGAAATCTTACCTTGTCAATTT
CTCGCAATATTTTTTCTATTTTTGGACTCAACCACAAAGGATTCGTCTAAACCAATTAACAAACTCTTGC
TTCGATTTTCTGGGGTACCTTTCAAGTGTACCAATAAATACTTTGTTAGTAAGGAATCAAATGCTGGAGA
ATTCTTTTCTAATAGATACTCGAATGAAAAAATTCAATACCACAGTCCCTGCAACTCCCCTCGTTGGATC
CTTATCAAAAGCTCAATTTTGTACTGGATCGGGGCATCCTATTAGTAAACCCGTTTGGACTGATTTATCA
GATTGGGATATTCTTGATCGTTTTGGTCGGATATGTAGAAATCTTTTTCATTATCATAGTGGATCTTCGA
AAAAACAGACTTTGTATCGACTAAAATATATACTTCGACTTTCATGTGCTAGAACTTTAGCTCGTAAACA
TAAAAGTACGGTACGAACTTTTATGCAACGATTGGGTTCGGTATTTTTAGAAGAATTTTTTACGGAAGAA
GAGCAAGTTTTTTCTTTGATGTTCACCAAAACAATTCACTTTTCTTTCCATGGATCACAAAGTGAGCGTA
TTTGGTATTTGGATATTATCCGTATCAATGACCTGGTGAATCCTCTTACTCTTAATTAATCATTAGACAA
AATTAATAAACTAGAAAAGATCGATATCAAGATAAAACTTGCACATTTTCCATTCTGAAATGTTCCATAG
TAGGTGAATCACTTTAACTAATTAAAAATTCTAAAAATTAGTGGACTTCCTCTTCGGAATAGAAATTGGC
TATTTCTACATAGGGAAAGTCGTGTGCAATGAAAAATGCAAGCACGATTTGGGGAGGGGTTTTTTTCTAT
TGTAACAAGGAAGAATTATCTACTCCAT
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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