The detailed information of tRNA gene sequence


Sequence ID>CHL090800034
Genome IDAJ970307
Search identical group
Phylum/ClassViridiplantae
SpeciesCucumis sativus
Start position on genome 4129
End posion on genome 1559
Amino Acid Lys
Anticodon TTT
Upstream region at tRNA start position 
gcatattttT
tRNA gene sequence 
GGGTTGCTAACTCAATGGTAGAGTACTCGGCTTTTAACCGACTAGTTCCGGGTTCGAGTC
CCGGGCAACCCATat
Downstream region at tRNA end position 
taatgatgat
Secondary structure (Cloverleaf model)
>CHL090800034	Lys	TTT
                   T      ATat taatgatgat
                     G - C
                     G - C
                     G - C
                     T - A
                     T - A
                     G - C
                     C - G          T G
                    T     G G C C C     A
        A A        A      | | | | |     G
      T     C T C A       C C G G G     C
      G     | | | |                 T T
      G     G A G T
        T A        A     TAGTT
                    C   C
                    T - A
                    C - G
                    G - C
                    G - C
                  C       A *
                  T       A
                    T T T
intron: position=39, length=2497 (in A-loop)
GTGCGGCTAGCATCTTTTACACATTTCTATGAAGTAACAGATTCGTCCATACTATCGGTAGAGTTTGTAA
GACCGCGACTGATCCTGAAAGGAATGAATGGAAAAAGCAGCATGTCGTATCAATGGAAAATTCTAGTAAT
ATTTTTACCTTACTAGATTAGGCCAAACCTTGTTTTAATTCGTGATGCGGAAAAAAAAAGTAAAGTCGGG
TCGAATCAATAAATGGATAGGGCACTATGCTCCAATTATAGAGAAATAAAAAGTAACGGGCTTATGTTCT
TAATTTGAATCATTCCCCGATCTAATTAGACGTTAAAACTATATTAGTGCTTGATGCGGGAAGGACTTTT
CTTATGAGTGAGTTATCCATTTTTTTCTAAGTCCTAACTATTAGTTACTCTACGTTATGAGGTAGAGGGG
AATGTGTAGAAGAAGCAGTATATTGATAAAGAGTTTTTTTCCAAAATCAAAAGAGCGATTGGGTTGAAAA
AATAAAGGATTTCTAACCATCTTTTTTATTCTAAAATAGAAACCAATTAGATGACAAAAGAAAAGAGAGG
ATAGAGAGTCCGTTGATAAGTCTTACCTATTTACGAGGTATCTATTATTATTCTTTATTTTACTCTAATA
CCTTGTTTTGACTGTATCGCACTATGTATCATTTGATAACCCAATAAATCCATTTATAGTATCCCCAGTT
CAAATCAAATTTCAAATGGAGGAATTTCAAGGATATTTAGAACTTGAGAAATCTCGGCAACGTGACTTCC
TATACCCACTTATCTTTCGGGAGTATATTTACGCATTTTCTCATGATCATTTTTTAAATGGATCCATTTT
GTTGGAAAATTCTGGTTATGACAAAAAATCCAGTTTACTAATGGTAAAACATTTAATTACTCGAATGTAT
CACCAGAATCATTTTTTTTTTTTCACTAATTATTATAACAAAAACCCTTTTTGGGGGTACAACAACAATT
TGTATTCTCAAATGTTATCAGAAGGGTTTGCAGTCATTGCGGAAATTCCACTTTCCCTACGATTAGTATC
TTCCTTAGAAGAAGAAGAAATCGCAAAATCTTATAATTTACGATCAAGTCATTCAATATTTCCTTTTTTA
GAGGATAAATTCCCACATTTAAATTATGTGTCAGATGTATTAATACCCTATCCGCTCCATCTGGAAATTT
TAGTTCAAATCCTTCGCTCCTGGGTGAAAGATGCCTCTTCTTTTCATTTATTACGGTTCTTTTTTCACGA
GTATTGTAATTTGAATAGTCTTAGTACTTCAAAAAAATTGATTTCTTTTTTTTCAAAAAGAAATCGAAGA
TTAGTCTTGTTGCTATACAATTCTTATGTATGTGGATACGAATCCATTTTCCTTTTTCTACGTAACCAAT
CTTCTCATATACGATTAACTTCTTATAAGGGCCTTTTTGAGCGAATATATTTCTATGGAAAAATCGAACA
TCTTGTCAAAGTGTTTGCTAATTATTTTTCGGCTATCTTACGGGTCTTCAAGGATCCTTTAATACATTAT
GTTAGATATCAAGCAAAATCTATTCTGGTTTCAAAGGATACGCCACTTCTGATTAATAAGTGGAAATATT
ACCTTGTCAATTTATGGCAATGTCATTTTTATGTGTGGTCACAACCAGAAAGGATCTATATAAACCAATT
ATCCAAGCGTTCTCTTGACTTTTTGGGCTATATTTCAAGTGTGCGATTAAATCCTTCAGTGGTATGGACT
CAGATGTTAGAAAATTCATTTCTAATAGATAATGCTACGCAGAAACTCGATACACTAGTTCCTATTATTA
CTCTGCTTGCATCATTGGCTAAAGCGAAATTTTGTAACGTCTTAGACATCCCATTAGTAAGCCGACCTGG
ATCGATTCGTCGGATTTTGATATTATTGATCGATTTTTGCGTATATCCAGAAATCTTTCTCATTATTACA
GAGGATCCTCAAAAAAAAAGAATTTGTATCGAATACAATATATACTTCGCCTTTCTTGTGTTAAAACTTT
GGCTCGTAAACACAAAAGTACTGTACCGTGCTCTTTTTAAAAGGTTAAATTCGGAATTATTGGAAGAATT
CTTTACGGAGCAAGAACAGGTTCTTTCTTTGATCTTCCCAAGAACTTCTTTTACTTTACGGAGGGTATAT
AGGGGGAAAATTTGGTATTTGGATATTATTTGCATGAATGATTTGGCCAATCATGAACGATTGGTTATGA
AACCATGTATATGAGAATTTTACTTAATAAATCCTCACGAGATACTAAAAAAATTCATTAATTTCTATTA
TGAAATGTTCATTTGGTAAGAGTTGATCAACAGAATATTCCACTTTCTTAGTTAGAATCCTGTCTAGGGA
AGTAACTGCGTTTTAGATGTATACATAGGTAAAGCCGTGTGCAATGAAAAATGCAAGCACGGTTTGGGGA
GGGATTTTTTTTACTTATTTTTTTTTTAAGTAAATTATCGACTCCAT
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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