The detailed information of tRNA gene sequence


Sequence ID>CHL090800130
Genome IDAY928077
Search identical group
Phylum/ClassViridiplantae
SpeciesZea mays cultivar B73
Start position on genome 3937
End posion on genome 1387
Amino Acid Lys
Anticodon TTT
Upstream region at tRNA start position 
tattttatcc
tRNA gene sequence 
GGGTTGCTAACTCAATGGTAGAGTACTCGGCTTTTAACCGACTAGTTCCGGGTTCGAGTC
CCGGGCAACCCAtat
Downstream region at tRNA end position 
ggaaaataga
Secondary structure (Cloverleaf model)
>CHL090800130	Lys	TTT
                   c      Atat ggaaaataga
                     G - C
                     G - C
                     G - C
                     T - A
                     T - A
                     G - C
                     C - G          T G
                    T     G G C C C     A
        A A        A      | | | | |     G
      T     C T C A       C C G G G     C
      G     | | | |                 T T
      G     G A G T
        T A        A     TAGTT
                    C   C
                    T - A
                    C - G
                    G - C
                    G - C
                  C       A *
                  T       A
                    T T T
intron: position=39, length=2479 (in A-loop)
GTGCGGCTATGATCTTTTACACATTTGGATGAAGCAACAAATTCGTCCAGACTCTTGGTAGAGTCTAGAA
GACCACGACTGATCCTCAAAGGTAATGAATGGAAAAAATAGCATGTCGTAATAAAATCAATTTCTTTTTT
TTTTTTTAATAAAAAAAATTCTGATTTTCTGGGTCTAGTGAATAAATGGATAGAGCCTGGCTCTAATTCT
GGTAAAATAAAAAAAAAGCAACGAGCTTAACTTCTTAATTGGTTAATTGGAAGGATTCCCCGATCTAATT
AGACGTTAAAAATAGATTAGTGCCTAATGTGGGGAAAGGTTAGGTTTTCCTATGAATGGACCCTTTACTT
TTTTTTTTTAGAAATCCTAATTATTCTTGATTATGGATTGAAAAGAGATGTTATGAATTGAATGTGTAAA
AGAAACAGTATATTGATAAAGAGACTGTATTCCAAAGTCAAAAGAGCGATTGGCCTGCAAAAATAAAAGA
TTTGTTCTTGTTTGTTTTATAATTAGAACAAACATAAACTAATTAGATAGAAAAGGAGTGGAAAAAGTTC
TATGGATTAGACTCCCTTTCTTTCCTGGGTTTGTATTATGCAACACCTTGTTCTGACCATATTGCACTAT
GTATCATCATTTGATAAACCGAGAAATGCTTTTTTTCTCTATTTCAAGTAGAAATACAAATGGAAAAATT
CGAAGGGTATTCAGAAAAACAGAAATCTCGTCAACACTACTTCGTCTACCCACTTCTCTTTCAGGAATAT
ATTTATGCATTTGCTCATGATTATGGATTAAATGGTTCCGAACCCGTGGAAATTTTTGGTTGTAATAACA
AGAAATTTAGTTCACTACTTGTGAAACGTTTAATTATTCGAATGTATCAGCAGAATTTTTTAATTAATTC
GGTTAATTATCCTAACCAAGATCGATTGTTGGATCACCGTAATTATTTTTATTCTGAGTTTTATTCTCAG
ATTCTATCTGAGGGGTTTGCGATCGTTGTAGAAATCCCACTCTCGCTAGGGCAACTATCTTGTCCGGAAG
AAAAAGAAATACCAAATTTTCAAAATTTACAATCTATTCATTCAATATTTCCCTTTTTAGAAGACAAATT
TTTGCATTTACATTATCTATCACATATAAAAATACCCTATCCTATCCATTTAGAAATCCTGGTTCAACTC
CTTGAATACCGGATTCAAGATGTTCCCTCTTTGCATTTATTGCGATTCTTTCTCCACTATTATTCGAATT
GGAATAGTTTTATTACTTCAATGAAATCCATTTTTCTTTTGAAAAAAGAAAATAAAAGACTATTTCGATT
CCTATATAACTCTTATGTATCAGAATATGAATTTTTCTTGTTGTTTCTTCATAAACAATCTTCTTGCTTA
CGATTAACATCTTCTGGAACCTTTCTGGAACGAATCATCTTTTCTGGGAAGATGGAACATTTTGGTGTAA
TGTACCCGGGGTTTTTTCGGAAAACCATATGGTTCTTTATGGATCCTCTTATGCATTATGTTCGATATCA
AGGAAAGGCAATTCTTGCATCAAAAGGCACTCTTCTTTTGAAGAAGAAATGGAAATCTTACCTTGTCAAT
TTCTCGCAATATTTTTTCTCTTTTTGGACTCAACCACAAAGGATTCGTCTAAACCAATTAACAAACTCTT
GCTTCGATTTTCTGGGGTACCTTTCAAGTGTACCAATAAATACTTTGTTAGTAAGGAATCAAATGCTGGA
GAATTCTTTTCTAATAGATACTCGAATGAAAAAATTCGATACCACAGTCCTTGCAACTCCCCTTGTCGGA
TCCTTATCAAAAGCTCAATTTTGTACTGGATCGGGGCATCCTATTAGTAAACCCGTTTGGACTGATTTAT
CAGATTGGGATATTCTTGATCGTTTTGGTCGGATATGTAGAAATATTTTTCATTATCATAGTGGATCTTC
GAAAAAACAGACTTTGTATCGACTAAAATATATACTTCGACTTTCATGTGCTAGAACTTTAGCTCGTAAA
CATAAAAGTACGGTACGAACTTTTATGCAACGATTGGGTTCGGTATTTTTAGAAGAATTTTTTACGGAAG
AAGAGCAAGTTTTTTCTTTGATGTTCACCAAAACAATTCACTTTTCTTTCCATGGATCACACAGTGAGCG
TATTTGGTATTTGGATATTATCCGTATCAATGACCTGGTGAATCCTCTTACTCTTAATTAATCATTAGAC
AAAATTAATAAACTAGAAAAGATCGATATCAAGATAAAACTTGCACATTTTCCATTCTGAAATGTTCCAT
AGTAGGTGAATCACTTTAACTAATTAAAAATTCTCAAAATTAGTGGACTTCCTCTTCGGAATAGAAATTG
GCTATTTCCACATAGGGAAAGTCGTGTGCAATGAAAAATGCAAGCACGATTTGGGGAGGGGTTTTTTCTA
TTGTAACAAGGAAGAATTATCTACTCCAT
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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