The detailed information of tRNA gene sequence


Sequence ID>CHL090800309
Genome IDEF489041
Search identical group
Phylum/ClassViridiplantae
SpeciesPopulus trichocarpa
Start position on genome 4310
End posion on genome 1680
Amino Acid Lys
Anticodon TTT
Upstream region at tRNA start position 
atttgtattT
tRNA gene sequence 
GGGTTGCTAACTCAATGGTAGAGTACTCGGCTTTTAACCGACTAGTTCCGGGTTCGAGTC
CCGGGCAACCCATta
Downstream region at tRNA end position 
taaccattat
Secondary structure (Cloverleaf model)
>CHL090800309	Lys	TTT
                   T      ATta taaccattat
                     G - C
                     G - C
                     G - C
                     T - A
                     T - A
                     G - C
                     C - G          T G
                    T     G G C C C     A
        A A        A      | | | | |     G
      T     C T C A       C C G G G     C
      G     | | | |                 T T
      G     G A G T
        T A        A     TAGTT
                    C   C
                    T - A
                    C - G
                    G - C
                    G - C
                  C       A *
                  T       A
                    T T T
intron: position=39, length=2557 (in A-loop)
GTGCGGCTAACAGCTTTTACACATTTGTACGAAGAAAGGGATTCGTCCATACCATCGGTATTATTTGTAA
GACCACGACTGATCCTGAAAGGAATGAATGGAAAAAACAGCATGTCGTATCAATGGAGAATTCTGAGAAT
ATTTGATTCTTACCGGATCGGCTCCAAACAAACCTTGTTTGAATTCTTGGTGCGTAACATAAAAACAAAT
GAATTCAAATTCAAAGTTGGGGTTGGGTCGAGTTAATAAATGGACAGAGCTCCGCGGCTCCAATTATAGG
GAAATAAAAAAGCAACGAGCTCCCGTTCTTAATTTGAATGATTTTCCGATCTAATTAGACGTTAAAAATA
GATTAGTGCCTAGTGCGGGAAAAGCTTTTTCTTGAGTGGATTTTCGATTTTTTTAATGAGTCCTAACTAT
TAGCTATTCTCCACTATGAAGGGGAGTTGAATGTGTAGAAGAAAAAGTATATTGATAAAGCAATTTTTTT
TTCCAAAATCAAAAAAGAGTGATTGACTTGAAAAAGTAAAGGATTTCTAGTCACCTATTACCCTATAAAT
GAACATAAACCAATTAGAAATGAACATAAACCAATTAGATGGAAAAAAGAGAGGATAGAGGGTCCGTTGG
TGAGTTTAACTATTTCCGAGGTATCTATTCTTTTTATATTATACTATTTTGTTTTTATGGTATCGCACTA
TGTATCATTTAATAACCCAATAAACTCCCTATCTTTGCTTCAATCAAATCGAATTAAAAATGAAAATAGA
GAAATCTCAAAGAAATTTAGAAATAGATAGATCTCGAAAAAATGACTTCCTATACCCACTTATCTTTCGG
GAGTATATTTATACATTTGCTCATGATCGTGACTTAAATAGATCTATTTTGTTAGAAAATGTAGGTTATG
ACAATAAATATAGTTTACTAATCGTAAAACGTTTAATTACTCGAATGTATCAACAGAATCATTTGATTAT
TTCTGCTAATGATTCTAACCAAAATACATTTTTTAGGTATAACAAAAATTTGTATTTTCAAATGATATCG
GAGGGGTTTGCAGTTATTGTGGAAATTCCATTTTCCTTACGATTAGTATCCTCTTTAGAAAGCTCAGAAA
TAGTAAAATCTCATAATTTACGATCAATTCATTCAATATTTCCTTTTTTAGAGGGCAAATTCCCACATTT
AAATTATCTGTCAGAGGGACTAATACCGTACCCCATCCATCTAGAAAAATTGGTTCAAATCCTTCGCTAT
TGGGTGAAAGATCCCTCCTCTTTGCATTTATTACGACTCTTTCTTCACGAGTATTGGAATTTGAACAGTC
TTATTATTCCAAAGAAATCTATTTCCTTTTTTGTAAAAAAGAATCAAAGATTCTTCTTGTTCTTATATAA
TTCTCATGTATATGAATACGAGTCCGTTTTCTTTTTTCTTTGTAAGCAATCCTTTCATTTCCGATTAACA
TTTTATCAGGTCTTTCTTGAGCGAATATATTTCTATGGAAAAATAGAACATTTTGTAGAAGTCTTTACTA
AGGATTGGGGGGACAGCCTATGCTTGCTCAAGGATCCTTTCATACATTATATTAGATATCAAGGAAAATC
CATTTTTGTCTCAAAGGATACGCCTCTTCTGATGAAAAAATGGAAATATTACCTTGTCAATTTATGTCAA
TGTCATTTTGATGTGTGCTTTCAACCCCAAAAGATCCATATAAACCCATTTTCATTATACAAGCATTCTT
TCGCCTTATTAGGTTATCTTTCAAGTTCAAGTGTACGACTAAACCTTTCAGTGGTACGGAGTCAAATGCT
AGAAAATGCATTTCTAATGGATAATATTATGAATAAACTCGATACAACAGTTTCAATTATTCCTTTGATT
GGATCATTAGCAAAAATGAAATTTTGTAACGCAGTAGGACATCCCATTAGTAAACCGACCTGGGCCGATT
TTTCGGATTCTGATATTATCGACCGATTTGTCCGTATATGCAGAAATCTTTCTCATTATTATAGCGGATC
CTCAAGAAAAAAGAGTTTGTATCGAATAAAATATATACTTCGACTTTCTTGTGTTAAAACGTTGGCTCGT
AAACACAAAAGTACTGTACGGATTTTTTTGAAAAGATTAGGTTCAGAATTATTGGAAGAGTTTTTTACGG
AGGAAGAGCAAATTCTTTTTTTGATCTTTCCAAGAGCTTCTTCTATTTCACAAAAGTTATATAGGGGGCG
GGTTTGGTATTTGGATATTATTTGTATCAACGAGCTGTCCAATCATGAATAATTGGTTATGAAAACATGG
AAATCGAAAATATCCCTAAACTAAATAGGGATAACAAAAGAAATCATCCATTTCCATTATGAAATGCTCA
TGCAATATACGAGTAAAGATTGAGTAAATGAGTATTTATCTTTCATAGGGGTTCCGTCTGGGGAGGGAAC
TGAGTTTTAGATGTATACATAGGGAAAGCCGTGTGCAATGAAAAATGCAAGCACGGTTTGGGGAGGGTTT
TTAAACTATTTTTTAACAAAGAAATTCTCTACTCCAT
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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