The detailed information of tRNA gene sequence


Sequence ID>CHL090800330
Genome IDX15901
Search identical group
Phylum/ClassViridiplantae
SpeciesOryza sativa Japonica Group
Start position on genome 3932
End posion on genome 1372
Amino Acid Lys
Anticodon TTT
Upstream region at tRNA start position 
tagtttatcT
tRNA gene sequence 
GGGTTGCTAACTCAATGGTAGAGTACTCGGCTTTTAACCGACTAGTTCCGGGTTCGAGTC
CCGGGCAACCCATat
Downstream region at tRNA end position 
ggaaactaga
Secondary structure (Cloverleaf model)
>CHL090800330	Lys	TTT
                   T      ATat ggaaactaga
                     G - C
                     G - C
                     G - C
                     T - A
                     T - A
                     G - C
                     C - G          T G
                    T     G G C C C     A
        A A        A      | | | | |     G
      T     C T C A       C C G G G     C
      G     | | | |                 T T
      G     G A G T
        T A        A     TAGTT
                    C   C
                    T - A
                    C - G
                    G - C
                    G - C
                  C       A *
                  T       A
                    T T T
intron: position=39, length=2487 (in A-loop)
GTGCGACTATGATCTTTTACACATTTGGATGAAGCAAAAAATTCGTCCAGACTCTTGGTAGAGTCTATAA
GACCGCGACTGATCCTCAAGGGTAATGAATGGAAAAAATAGCATGTCGTAATAAAATCAATTTCTTATTT
TGGATTTTTGGAATGGAATAAAAAAATTCTGATTTTCTGGGTCTAATGAATAAATGGATAGAGCCTGGCT
CCAATTCTGGTAAAACAAAAAGCAACGAGCTTAACTTCTTAATTGGAAGAACTCCCTGATCTAATTAGAC
GTTAAAAATAGATTAGTGCCTGATGTAGGGAAAAGCTGGTTTTCCTATGAGTAGACCTTTGATTTTTTCT
TTTTTTTTTAGAAATCCTAATTATTCTTGATTTTGGATTGAAAAGGATGTTATGGATTGAATGTGTAAAA
GAAGCAGTATATTGATAAAGAGACTGTATCCCAAAGTCAAAAGAGCAATTGGCCTGCAAAAATAAAGGAT
TTGTTCTCTTTTGTAATTAGAACAAACATAAACAAATTGGATAGAAAAGGAGCGGAAAAAGATCCGTGGA
TTAGACTCCTTTTCTTCCCCAGGGGTTTGTATTAAAAAATGCAACACCCTGTTCTGACCATATTGTACTA
TGTATCACCATTTGATAAACCGAGAAATATTTCTCTCTCTCTGATTCAAGTAGAAATACAAATGGAAAAA
TTCGAGGGTTATTCAGAAAAACTTAAATTTCCTAGACAATATTTCGTCTACCCACTACTCTTTCAGGAGT
ACATTTATGTGTTTGCCCATGATTATGGATTAAATGGTTCCGAACTTGTCGAAATTATTGGTTCTAATAA
CAAGAAATTTAGTTCACTACTTGTGAAACGGTTAATGATTCGAATGTATCAGCAGAATTTTTGGATTAAT
TTGGTTAATCATCCTAACCAAGATCGATTATTGGATTACAACAATTTTTTTTATTCTGAGTTTTATTCTC
AGATTCTATCTGAGGGGTTTGCGATCGTTGTAGAAATCCCATTCTCGCTACGAGAACAGTCTTGTCCGGA
AGAAAAAGAAATACCAAAGTTTCAGAATTTACGATCTATTCATTCAATATTTCCTTTTTTAGAAGACAAA
TTTTTGCACTTACATTATCTAGCACATATAGAAATACCCTATCCTATCCATTTGGATATCTTGCTTCAAC
TCCTTCAATACCGGATCCAAGATGTTCCATCCTTGCATTTATTGCGATTCTTTCTCAACTACTACTCGAA
TTGGAATAGTTTTATTACTTCAATGAAATCCATTTTTATTTTGAAAAAAGAAAATAAAAGACTATTTCGG
TTCCTATATAACTCTTATGTATCAGAATATGAATTTTTCTTGTTGTTTCTTCGTAAACAATCTTCTTGCT
TGCGATTAACTTCTTCCGGAACCTTTCTGGAACGAATCATCTTTTCTAGGAAGATGGAACATTTTGGGTT
AATGTACCCTGCTTTTTTTCGGAAAACCATATGGTTCGTTATGGATCCCCTTATGCATTATGTTCGATAT
CAAGGAAAGGCAATTCTTGCATCAAAAGGAACTCTTCTTTTGAAGAAGAAATGGAAATGTTACCTTGTCC
GTTTGTGGCAATATTCTTTCTCTTTTTGGACTCAACCGCAAAGGATCCATCTAAACCAATTAGAAAACTC
TTGCTTCGATTTTCTGGGGTACTTTTCAAGTGTACCAATAAATTCTTTGTTAGTAAGGAATCAAATGCTG
GAGAATTCATTTCTAATAGATACTCAAATGAAAAAATTCGATACCAAAGTCCCTGTTACTCCTCTCATTG
GATCTTTAGCAAAAGCCCAATTTTGTACTGGATCGGGGCATCCTATTAGTAAACCAATTTGGACCGATTT
ATCGGATTGGGATATTCTTGATCGGTTTGGTCGGATATGTAGAAATCTTTTTCATTATCACAGTGGATCT
TCAAAAAAGAAGACTTTGTATCGACTAAAGTATATACTTCGACTTTCATGCGCTAGAACTTTAGCTCGTA
AACATAAAAGCACGGTACGAGCTTTTATGCAATGGTTGGGTTCGGTATTTTTAGAAGAATTTTTTACGGA
AGAAGAGCAAGTTTTTTCTTTGATGTTCGCCAAAACAACTTACTTTTCTTTCCGTGGATCGCACAGTGAG
CGTATTTGGTATTTGGATATTCTCCGTATCAATGATCTGGTGAATCCTCTTAATTAATCATTAAACAAAA
CTAATAAACTAGAAATGATTGATAAATGATCAAGGTAAAACTTTCACAGTTTCCATTCTGAAATGTTCTC
TGTACTATAATAAATAGTAAGTGAATCAACTTACTACTAAAAAAATTAGTAGACTTCCTCTTCGGAATAG
AAATAGCCTATTTCTACATAGGGAAAGTCGTGTGCAATGAAAAATGCAAGCACGATTTGGGGAGAGGTTT
TTTCTCTATTGTAACAAGGAATAATTATCTACTCCAT
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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