Composite table

Complete genome

Archaea


[Important Notice]
This table can browse both anticodon number and codon usage concurrently.
When you consider the correlation of codon usage with anticodon number (i.e., number of tRNA genes having the respective anticodon), you have to pay attention to "wobble pairing" between the codon third position and the anticodon first position. For example, G base at the anticodon first position can pair with either U or C at the codon third position, and thus one anticodon can recognize two codons. U at the anticodon first position can pair with either A or G at the codon third position, and thus the anticodon also can recognize two codons. Furthermore, there exist the cases where the anticodon first position is enzymatically modified resulting in change of the codon recognition pattern.
Number of tRNA genes / Codon usage (permillage)
T C A G
AA anti
codon		 tRNA codon usage AA anti
codon		 tRNA codon usage AA anti
codon		 tRNA codon usage AA anti
codon		 tRNA codon usage
T phe AAA 0 TTT 17.99 Ser AGA 0 TCT 9.50 Tyr ATA 0 TAT 16.81 Cys ACA 0 TGT 4.60 T
GAA 287 TTC 21.41 GGA 333 TCC 10.61 GTA 361 TAC 19.30 GCA 359 TGC 4.71 C
Leu TAA 255 TTA 14.78 TGA 271 TCA 11.38 ochre TTA 1 TAA 1.42 opal Sec TCA 16 TGA 1.48 A
CAA 241 TTG 9.79 CGA 268 TCG 9.16 amber CTA 7 TAG 0.66 Trp CCA 317 TGG 10.27 G
C Leu AAG 2 CTT 18.54 Pro AGG 0 CCT 9.51 His ATG 0 CAT 7.05 Arg ACG 1 CGT 3.91 T
GAG 293 CTC 24.29 GGG 232 CCC 10.60 GTG 260 CAC 9.79 GCG 263 CGC 8.37 C
TAG 260 CTA 8.46 TGG 255 CCA 10.16 Gln TTG 258 CAA 7.78 TCG 256 CGA 3.72 A
CAG 226 CTG 19.30 CGG 181 CCG 11.55 CTG 230 CAG 15.38 CCG 188 CGG 7.51 G
A Ile AAT 0 ATT 22.92 Thr AGT 0 ACT 11.41 Asn ATT 0 AAT 18.79 Ser ACT 0 AGT 8.73 T
GAT 291 ATC 23.40 GGT 265 ACC 15.75 GTT 294 AAC 19.61 GCT 265 AGC 11.83 C
TAT 4 ATA 26.48 TGT 255 ACA 13.24 Lys TTT 276 AAA 31.11 Arg TCT 251 AGA 13.74 A
Met CAT 833 ATG 22.56 CGT 242 ACG 12.32 CTT 230 AAG 27.10 CCT 223 AGG 15.49 G
G Val AAC 0 GTT 21.25 Ala AGC 0 GCT 15.74 Asp ATC 0 GAT 27.37 Gly ACC 0 GGT 15.48 T
GAC 284 GTC 24.04 GGC 258 GCC 23.49 GTC 284 GAC 31.06 GCC 314 GGC 21.69 C
TAC 260 GTA 15.49 TGC 351 GCA 20.95 Glu TTC 276 GAA 37.80 TCC 255 GGA 21.84 A
CAC 238 GTG 17.43 CGC 230 GCG 17.50 CTC 217 GAG 39.59 CCC 217 GGG 15.04 G



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