Composite table

Draft genome(WGS)

Archaea


[Important Notice]
This table can browse both anticodon number and codon usage concurrently.
When you consider the correlation of codon usage with anticodon number (i.e., number of tRNA genes having the respective anticodon), you have to pay attention to "wobble pairing" between the codon third position and the anticodon first position. For example, G base at the anticodon first position can pair with either U or C at the codon third position, and thus one anticodon can recognize two codons. U at the anticodon first position can pair with either A or G at the codon third position, and thus the anticodon also can recognize two codons. Furthermore, there exist the cases where the anticodon first position is enzymatically modified resulting in change of the codon recognition pattern.
Number of tRNA genes / Codon usage (permillage)
T C A G
AA anti
codon		 tRNA codon usage AA anti
codon		 tRNA codon usage AA anti
codon		 tRNA codon usage AA anti
codon		 tRNA codon usage
T phe AAA 0 TTT 13.37 Ser AGA 0 TCT 7.40 Tyr ATA 0 TAT 11.77 Cys ACA 0 TGT 4.56 T
GAA 797 TTC 24.01 GGA 716 TCC 11.05 GTA 492 TAC 19.31 GCA 885 TGC 4.70 C
Leu TAA 658 TTA 8.65 TGA 754 TCA 8.64 ochre TTA 0 TAA 1.21 opal Sec TCA 8 TGA 1.65 A
CAA 611 TTG 7.52 CGA 520 TCG 14.24 amber CTA 1 TAG 0.67 Trp CCA 55 TGG 10.48 G
C Leu AAG 27 CTT 14.82 Pro AGG 9 CCT 7.28 His ATG 0 CAT 5.77 Arg ACG 4 CGT 4.78 T
GAG 844 CTC 34.01 GGG 538 CCC 12.18 GTG 783 CAC 12.50 GCG 748 CGC 15.86 C
TAG 718 CTA 5.02 TGG 750 CCA 7.11 Gln TTG 657 CAA 6.87 TCG 653 CGA 6.42 A
CAG 653 CTG 21.34 CGG 410 CCG 16.75 CTG 661 CAG 17.58 CCG 517 CGG 12.79 G
A Ile AAT 0 ATT 17.37 Thr AGT 2 ACT 8.71 Asn ATT 0 AAT 13.93 Ser ACT 0 AGT 6.87 T
GAT 810 ATC 27.72 GGT 750 ACC 19.53 GTT 762 AAC 19.61 GCT 785 AGC 12.19 C
TAT 15 ATA 15.11 TGT 720 ACA 10.72 Lys TTT 697 AAA 24.28 Arg TCT 594 AGA 8.63 A
Met CAT 1508 ATG 20.50 CGT 629 ACG 18.74 CTT 626 AAG 19.18 CCT 624 AGG 8.60 G
G Val AAC 0 GTT 15.01 Ala AGC 0 GCT 12.15 Asp ATC 0 GAT 22.47 Gly ACC 0 GGT 13.39 T
GAC 841 GTC 37.32 GGC 784 GCC 30.31 GTC 980 GAC 46.74 GCC 1036 GGC 30.31 C
TAC 763 GTA 10.40 TGC 684 GCA 17.52 Glu TTC 712 GAA 35.49 TCC 696 GGA 17.64 A
CAC 664 GTG 17.91 CGC 645 GCG 29.68 CTC 664 GAG 44.39 CCC 581 GGG 17.23 G



BACK