Home | tRNADB-CE : tRNA gene database curated manually by experts

Composite table

Acidithiobacillia


[Important Notice]
This table can browse both anticodon number and codon usage concurrently.
When you consider the correlation of codon usage with anticodon number (i.e., number of tRNA genes having the respective anticodon), you have to pay attention to "wobble pairing" between the codon third position and the anticodon first position. For example, G base at the anticodon first position can pair with either U or C at the codon third position, and thus one anticodon can recognize two codons. U at the anticodon first position can pair with either A or G at the codon third position, and thus the anticodon also can recognize two codons. Furthermore, there exist the cases where the anticodon first position is enzymatically modified resulting in change of the codon recognition pattern.
Number of tRNA genes / Codon usage (permillage)
T C A G
AA anti
codon
tRNA codon usage AA anti
codon
tRNA codon usage AA anti
codon
tRNA codon usage AA anti
codon
tRNA codon usage
T phe AAA 8 TTT 19.24 Ser AGA 0 TCT 5.76 Tyr ATA 0 TAT 14.27 Cys ACA 0 TGT 3.71 T
GAA 42 TTC 16.92 GGA 33 TCC 12.61 GTA 40 TAC 12.17 GCA 39 TGC 5.44 C
Leu TAA 33 TTA 5.70 TGA 17 TCA 4.20 ochre TTA 0 TAA 0.94 opal Sec TCA 0 TGA 1.91 A
CAA 33 TTG 19.50 CGA 33 TCG 8.57 amber CTA 0 TAG 0.62 Trp CCA 39 TGG 16.21 G
C Leu AAG 8 CTT 10.98 Pro AGG 0 CCT 7.62 His ATG 0 CAT 13.97 Arg ACG 34 CGT 14.08 T
GAG 34 CTC 21.26 GGG 35 CCC 18.36 GTG 42 CAC 12.10 GCG 0 CGC 27.24 C
TAG 35 CTA 4.18 TGG 41 CCA 7.01 Gln TTG 42 CAA 13.39 TCG 13 CGA 5.24 A
CAG 43 CTG 49.27 CGG 33 CCG 18.31 CTG 28 CAG 30.75 CCG 28 CGG 15.56 G
A Ile AAT 0 ATT 20.85 Thr AGT 0 ACT 6.07 Asn ATT 0 AAT 15.27 Ser ACT 0 AGT 9.60 T
GAT 40 ATC 26.15 GGT 35 ACC 23.84 GTT 35 AAC 14.13 GCT 40 AGC 15.23 C
TAT 4 ATA 5.40 TGT 43 ACA 5.38 Lys TTT 44 AAA 16.50 Arg TCT 36 AGA 2.56 A
Met CAT 104 ATG 24.20 CGT 38 ACG 13.39 CTT 29 AAG 18.18 CCT 35 AGG 2.83 G
G Val AAC 0 GTT 11.27 Ala AGC 0 GCT 15.37 Asp ATC 0 GAT 28.62 Gly ACC 0 GGT 21.00 T
GAC 28 GTC 21.01 GGC 31 GCC 47.68 GTC 37 GAC 22.11 GCC 39 GGC 30.66 C
TAC 40 GTA 9.45 TGC 31 GCA 16.40 Glu TTC 32 GAA 30.55 TCC 30 GGA 12.14 A
CAC 29 GTG 27.69 CGC 28 GCG 29.57 CTC 43 GAG 25.83 CCC 36 GGG 14.04 G



BACK