Composite table

Acidithiobacillia


[Important Notice]
This table can browse both anticodon number and codon usage concurrently.
When you consider the correlation of codon usage with anticodon number (i.e., number of tRNA genes having the respective anticodon), you have to pay attention to "wobble pairing" between the codon third position and the anticodon first position. For example, G base at the anticodon first position can pair with either U or C at the codon third position, and thus one anticodon can recognize two codons. U at the anticodon first position can pair with either A or G at the codon third position, and thus the anticodon also can recognize two codons. Furthermore, there exist the cases where the anticodon first position is enzymatically modified resulting in change of the codon recognition pattern.
Number of tRNA genes / Codon usage (permillage)
T C A G
AA anti
codon		 tRNA codon usage AA anti
codon		 tRNA codon usage AA anti
codon		 tRNA codon usage AA anti
codon		 tRNA codon usage
T phe AAA 9 TTT 18.32 Ser AGA 0 TCT 5.37 Tyr ATA 0 TAT 13.93 Cys ACA 0 TGT 3.64 T
GAA 61 TTC 17.60 GGA 52 TCC 12.96 GTA 59 TAC 12.29 GCA 59 TGC 5.70 C
Leu TAA 52 TTA 5.01 TGA 26 TCA 3.76 ochre TTA 0 TAA 0.89 opal Sec TCA 0 TGA 1.98 A
CAA 47 TTG 18.86 CGA 50 TCG 8.39 amber CTA 0 TAG 0.59 Trp CCA 57 TGG 16.30 G
C Leu AAG 9 CTT 10.40 Pro AGG 0 CCT 7.27 His ATG 0 CAT 13.63 Arg ACG 49 CGT 13.87 T
GAG 48 CTC 22.43 GGG 48 CCC 19.23 GTG 61 CAC 12.63 GCG 0 CGC 28.19 C
TAG 52 CTA 4.12 TGG 59 CCA 6.76 Gln TTG 60 CAA 12.75 TCG 17 CGA 5.12 A
CAG 62 CTG 50.54 CGG 46 CCG 18.60 CTG 46 CAG 31.05 CCG 41 CGG 16.43 G
A Ile AAT 0 ATT 18.83 Thr AGT 0 ACT 5.60 Asn ATT 0 AAT 14.36 Ser ACT 0 AGT 9.05 T
GAT 58 ATC 27.70 GGT 49 ACC 24.43 GTT 52 AAC 14.20 GCT 56 AGC 15.64 C
TAT 6 ATA 5.29 TGT 61 ACA 5.02 Lys TTT 62 AAA 15.21 Arg TCT 52 AGA 2.40 A
Met CAT 152 ATG 24.01 CGT 55 ACG 13.51 CTT 46 AAG 18.03 CCT 50 AGG 2.87 G
G Val AAC 0 GTT 10.27 Ala AGC 0 GCT 14.32 Asp ATC 0 GAT 27.89 Gly ACC 0 GGT 20.48 T
GAC 41 GTC 21.43 GGC 46 GCC 49.43 GTC 56 GAC 22.73 GCC 55 GGC 31.88 C
TAC 59 GTA 9.10 TGC 47 GCA 15.64 Glu TTC 43 GAA 28.99 TCC 46 GGA 11.69 A
CAC 43 GTG 28.90 CGC 41 GCG 30.98 CTC 62 GAG 26.81 CCC 49 GGG 14.69 G



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