Composite table

Basidiomycota


[Important Notice]
This table can browse both anticodon number and codon usage concurrently.
When you consider the correlation of codon usage with anticodon number (i.e., number of tRNA genes having the respective anticodon), you have to pay attention to "wobble pairing" between the codon third position and the anticodon first position. For example, G base at the anticodon first position can pair with either U or C at the codon third position, and thus one anticodon can recognize two codons. U at the anticodon first position can pair with either A or G at the codon third position, and thus the anticodon also can recognize two codons. Furthermore, there exist the cases where the anticodon first position is enzymatically modified resulting in change of the codon recognition pattern.
Number of tRNA genes / Codon usage (permillage)
T C A G
AA anti
codon		 tRNA codon usage AA anti
codon		 tRNA codon usage AA anti
codon		 tRNA codon usage AA anti
codon		 tRNA codon usage
T phe AAA 0 TTT 14.52 Ser AGA 12 TCT 23.08 Tyr ATA 0 TAT 11.33 Cys ACA 0 TGT 5.53 T
GAA 5 TTC 19.82 GGA 0 TCC 18.91 GTA 4 TAC 14.06 GCA 3 TGC 4.81 C
Leu TAA 1 TTA 7.42 TGA 1 TCA 14.70 ochre TTA 0 TAA 0.76 opal Sec TCA 0 TGA 0.51 A
CAA 3 TTG 18.63 CGA 1 TCG 10.77 amber CTA 0 TAG 0.60 Trp CCA 3 TGG 13.79 G
C Leu AAG 6 CTT 21.88 Pro AGG 5 CCT 23.93 His ATG 0 CAT 12.24 Arg ACG 3 CGT 9.58 T
GAG 0 CTC 24.04 GGG 0 CCC 18.06 GTG 5 CAC 11.19 GCG 0 CGC 8.14 C
TAG 0 CTA 5.42 TGG 1 CCA 13.73 Gln TTG 3 CAA 20.36 TCG 5 CGA 12.29 A
CAG 1 CTG 11.53 CGG 1 CCG 10.36 CTG 3 CAG 17.93 CCG 2 CGG 5.45 G
A Ile AAT 6 ATT 16.80 Thr AGT 5 ACT 17.03 Asn ATT 0 AAT 14.91 Ser ACT 0 AGT 10.54 T
GAT 0 ATC 24.22 GGT 0 ACC 17.73 GTT 5 AAC 18.93 GCT 2 AGC 11.55 C
TAT 1 ATA 7.08 TGT 1 ACA 13.27 Lys TTT 1 AAA 20.45 Arg TCT 1 AGA 11.66 A
Met CAT 6 ATG 21.58 CGT 1 ACG 9.53 CTT 7 AAG 31.38 CCT 3 AGG 12.31 G
G Val AAC 7 GTT 15.77 Ala AGC 7 GCT 26.99 Asp ATC 0 GAT 28.39 Gly ACC 0 GGT 23.91 T
GAC 0 GTC 22.08 GGC 0 GCC 25.56 GTC 7 GAC 25.21 GCC 9 GGC 18.77 C
TAC 0 GTA 8.62 TGC 2 GCA 16.28 Glu TTC 3 GAA 33.25 TCC 3 GGA 17.00 A
CAC 2 GTG 14.31 CGC 2 GCG 15.16 CTC 11 GAG 32.73 CCC 2 GGG 11.60 G



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