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Composite table

Candidatus Peregrinibacteria


[Important Notice]
This table can browse both anticodon number and codon usage concurrently.
When you consider the correlation of codon usage with anticodon number (i.e., number of tRNA genes having the respective anticodon), you have to pay attention to "wobble pairing" between the codon third position and the anticodon first position. For example, G base at the anticodon first position can pair with either U or C at the codon third position, and thus one anticodon can recognize two codons. U at the anticodon first position can pair with either A or G at the codon third position, and thus the anticodon also can recognize two codons. Furthermore, there exist the cases where the anticodon first position is enzymatically modified resulting in change of the codon recognition pattern.
Number of tRNA genes / Codon usage (permillage)
T C A G
AA anti
codon
tRNA codon usage AA anti
codon
tRNA codon usage AA anti
codon
tRNA codon usage AA anti
codon
tRNA codon usage
T phe AAA 0 TTT 9.70 Ser AGA 0 TCT 7.65 Tyr ATA 0 TAT 5.91 Cys ACA 0 TGT 4.66 T
GAA 5 TTC 30.68 GGA 5 TCC 16.85 GTA 5 TAC 18.00 GCA 5 TGC 12.04 C
Leu TAA 5 TTA 1.91 TGA 5 TCA 5.19 ochre TTA 0 TAA 0.81 opal Sec TCA 0 TGA 1.45 A
CAA 5 TTG 7.55 CGA 5 TCG 15.37 amber CTA 0 TAG 0.68 Trp CCA 5 TGG 12.15 G
C Leu AAG 0 CTT 9.06 Pro AGG 0 CCT 6.32 His ATG 0 CAT 7.67 Arg ACG 0 CGT 9.55 T
GAG 5 CTC 47.20 GGG 5 CCC 19.76 GTG 5 CAC 14.15 GCG 5 CGC 28.73 C
TAG 5 CTA 1.13 TGG 5 CCA 4.09 Gln TTG 5 CAA 6.68 TCG 5 CGA 3.51 A
CAG 5 CTG 34.22 CGG 5 CCG 20.79 CTG 5 CAG 31.92 CCG 5 CGG 12.49 G
A Ile AAT 0 ATT 13.14 Thr AGT 0 ACT 4.58 Asn ATT 0 AAT 12.65 Ser ACT 0 AGT 6.02 T
GAT 5 ATC 39.22 GGT 5 ACC 21.53 GTT 5 AAC 15.34 GCT 5 AGC 14.39 C
TAT 5 ATA 1.80 TGT 5 ACA 8.97 Lys TTT 5 AAA 16.54 Arg TCT 5 AGA 3.38 A
Met CAT 10 ATG 21.71 CGT 5 ACG 25.47 CTT 5 AAG 29.33 CCT 5 AGG 3.98 G
G Val AAC 0 GTT 7.86 Ala AGC 0 GCT 9.19 Asp ATC 0 GAT 28.10 Gly ACC 0 GGT 10.75 T
GAC 5 GTC 22.56 GGC 5 GCC 35.55 GTC 5 GAC 21.35 GCC 5 GGC 33.39 C
TAC 5 GTA 4.19 TGC 5 GCA 18.21 Glu TTC 5 GAA 26.32 TCC 5 GGA 16.09 A
CAC 5 GTG 36.12 CGC 5 GCG 30.81 CTC 5 GAG 37.46 CCC 5 GGG 16.15 G



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