Home | tRNADB-CE : tRNA gene database curated manually by experts

Composite table

CandidatusHydrogenedentes


[Important Notice]
This table can browse both anticodon number and codon usage concurrently.
When you consider the correlation of codon usage with anticodon number (i.e., number of tRNA genes having the respective anticodon), you have to pay attention to "wobble pairing" between the codon third position and the anticodon first position. For example, G base at the anticodon first position can pair with either U or C at the codon third position, and thus one anticodon can recognize two codons. U at the anticodon first position can pair with either A or G at the codon third position, and thus the anticodon also can recognize two codons. Furthermore, there exist the cases where the anticodon first position is enzymatically modified resulting in change of the codon recognition pattern.
Number of tRNA genes / Codon usage (permillage)
T C A G
AA anti
codon
tRNA codon usage AA anti
codon
tRNA codon usage AA anti
codon
tRNA codon usage AA anti
codon
tRNA codon usage
T phe AAA 0 TTT 30.46 Ser AGA 0 TCT 17.79 Tyr ATA 0 TAT 18.11 Cys ACA 0 TGT 3.37 T
GAA 0 TTC 15.82 GGA 0 TCC 7.74 GTA 1 TAC 9.76 GCA 1 TGC 6.41 C
Leu TAA 1 TTA 15.64 TGA 1 TCA 17.21 ochre TTA 0 TAA 1.15 opal Sec TCA 0 TGA 1.36 A
CAA 1 TTG 19.94 CGA 1 TCG 15.27 amber CTA 0 TAG 0.50 Trp CCA 1 TGG 10.90 G
C Leu AAG 0 CTT 28.88 Pro AGG 0 CCT 15.15 His ATG 0 CAT 11.27 Arg ACG 0 CGT 6.17 T
GAG 1 CTC 14.01 GGG 0 CCC 3.52 GTG 1 CAC 5.15 GCG 1 CGC 9.21 C
TAG 0 CTA 6.68 TGG 1 CCA 6.65 Gln TTG 1 CAA 11.96 TCG 1 CGA 10.07 A
CAG 0 CTG 12.56 CGG 1 CCG 14.60 CTG 1 CAG 11.82 CCG 1 CGG 4.95 G
A Ile AAT 0 ATT 41.90 Thr AGT 0 ACT 17.64 Asn ATT 0 AAT 29.22 Ser ACT 0 AGT 6.74 T
GAT 1 ATC 18.11 GGT 1 ACC 6.47 GTT 1 AAC 11.66 GCT 2 AGC 8.24 C
TAT 0 ATA 23.52 TGT 1 ACA 14.54 Lys TTT 1 AAA 44.65 Arg TCT 1 AGA 21.70 A
Met CAT 3 ATG 22.51 CGT 1 ACG 7.98 CTT 1 AAG 21.51 CCT 1 AGG 5.68 G
G Val AAC 0 GTT 25.41 Ala AGC 0 GCT 22.06 Asp ATC 0 GAT 33.72 Gly ACC 0 GGT 11.69 T
GAC 1 GTC 12.88 GGC 0 GCC 11.40 GTC 1 GAC 16.77 GCC 1 GGC 18.68 C
TAC 1 GTA 13.65 TGC 1 GCA 25.45 Glu TTC 1 GAA 49.58 TCC 1 GGA 32.67 A
CAC 1 GTG 10.67 CGC 0 GCG 19.82 CTC 1 GAG 23.13 CCC 1 GGG 6.26 G



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