Home | tRNADB-CE : tRNA gene database curated manually by experts

Composite table

CandidatusJorgensenbacteria


[Important Notice]
This table can browse both anticodon number and codon usage concurrently.
When you consider the correlation of codon usage with anticodon number (i.e., number of tRNA genes having the respective anticodon), you have to pay attention to "wobble pairing" between the codon third position and the anticodon first position. For example, G base at the anticodon first position can pair with either U or C at the codon third position, and thus one anticodon can recognize two codons. U at the anticodon first position can pair with either A or G at the codon third position, and thus the anticodon also can recognize two codons. Furthermore, there exist the cases where the anticodon first position is enzymatically modified resulting in change of the codon recognition pattern.
Number of tRNA genes / Codon usage (permillage)
T C A G
AA anti
codon
tRNA codon usage AA anti
codon
tRNA codon usage AA anti
codon
tRNA codon usage AA anti
codon
tRNA codon usage
T phe AAA 0 TTT 24.20 Ser AGA 0 TCT 6.45 Tyr ATA 0 TAT 13.97 Cys ACA 0 TGT 2.59 T
GAA 1 TTC 23.89 GGA 3 TCC 12.24 GTA 2 TAC 16.26 GCA 2 TGC 5.00 C
Leu TAA 2 TTA 7.69 TGA 2 TCA 6.38 ochre TTA 0 TAA 1.76 opal Sec TCA 0 TGA 1.13 A
CAA 3 TTG 18.80 CGA 2 TCG 15.15 amber CTA 0 TAG 0.73 Trp CCA 1 TGG 10.73 G
C Leu AAG 0 CTT 27.84 Pro AGG 0 CCT 5.79 His ATG 0 CAT 6.73 Arg ACG 0 CGT 5.71 T
GAG 3 CTC 23.98 GGG 2 CCC 11.66 GTG 1 CAC 10.44 GCG 2 CGC 17.71 C
TAG 2 CTA 2.95 TGG 2 CCA 3.42 Gln TTG 3 CAA 9.42 TCG 2 CGA 3.99 A
CAG 2 CTG 14.78 CGG 2 CCG 21.17 CTG 2 CAG 14.84 CCG 3 CGG 16.85 G
A Ile AAT 0 ATT 28.90 Thr AGT 0 ACT 7.66 Asn ATT 0 AAT 16.39 Ser ACT 0 AGT 5.95 T
GAT 4 ATC 23.59 GGT 2 ACC 18.17 GTT 2 AAC 20.62 GCT 2 AGC 12.31 C
TAT 2 ATA 14.64 TGT 1 ACA 7.49 Lys TTT 2 AAA 42.84 Arg TCT 2 AGA 8.72 A
Met CAT 4 ATG 19.42 CGT 3 ACG 17.89 CTT 2 AAG 26.22 CCT 2 AGG 6.78 G
G Val AAC 0 GTT 26.37 Ala AGC 0 GCT 11.88 Asp ATC 0 GAT 18.75 Gly ACC 0 GGT 12.95 T
GAC 2 GTC 19.00 GGC 3 GCC 27.30 GTC 3 GAC 28.49 GCC 2 GGC 32.99 C
TAC 3 GTA 10.07 TGC 0 GCA 12.34 Glu TTC 1 GAA 46.90 TCC 3 GGA 17.39 A
CAC 3 GTG 20.96 CGC 2 GCG 30.63 CTC 3 GAG 28.31 CCC 3 GGG 13.84 G



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