Home | tRNADB-CE : tRNA gene database curated manually by experts

Composite table

CandidatusNanohaloarchaeota


[Important Notice]
This table can browse both anticodon number and codon usage concurrently.
When you consider the correlation of codon usage with anticodon number (i.e., number of tRNA genes having the respective anticodon), you have to pay attention to "wobble pairing" between the codon third position and the anticodon first position. For example, G base at the anticodon first position can pair with either U or C at the codon third position, and thus one anticodon can recognize two codons. U at the anticodon first position can pair with either A or G at the codon third position, and thus the anticodon also can recognize two codons. Furthermore, there exist the cases where the anticodon first position is enzymatically modified resulting in change of the codon recognition pattern.
Number of tRNA genes / Codon usage (permillage)
T C A G
AA anti
codon
tRNA codon usage AA anti
codon
tRNA codon usage AA anti
codon
tRNA codon usage AA anti
codon
tRNA codon usage
T phe AAA 0 TTT 12.39 Ser AGA 0 TCT 10.92 Tyr ATA 0 TAT 9.37 Cys ACA 0 TGT 3.17 T
GAA 1 TTC 27.93 GGA 1 TCC 12.17 GTA 1 TAC 23.30 GCA 2 TGC 2.89 C
Leu TAA 1 TTA 4.93 TGA 2 TCA 15.40 ochre TTA 0 TAA 1.50 opal Sec TCA 0 TGA 1.02 A
CAA 1 TTG 5.70 CGA 1 TCG 7.24 amber CTA 0 TAG 1.02 Trp CCA 1 TGG 9.29 G
C Leu AAG 0 CTT 22.53 Pro AGG 0 CCT 14.28 His ATG 0 CAT 7.13 Arg ACG 0 CGT 5.02 T
GAG 1 CTC 15.85 GGG 1 CCC 3.12 GTG 1 CAC 8.80 GCG 1 CGC 2.44 C
TAG 1 CTA 7.80 TGG 1 CCA 7.68 Gln TTG 0 CAA 4.80 TCG 1 CGA 1.43 A
CAG 0 CTG 25.31 CGG 0 CCG 8.00 CTG 0 CAG 28.82 CCG 0 CGG 2.85 G
A Ile AAT 0 ATT 9.75 Thr AGT 0 ACT 11.29 Asn ATT 0 AAT 12.81 Ser ACT 0 AGT 8.92 T
GAT 1 ATC 29.08 GGT 1 ACC 11.37 GTT 1 AAC 30.88 GCT 1 AGC 13.46 C
TAT 1 ATA 20.46 TGT 1 ACA 22.95 Lys TTT 1 AAA 36.68 Arg TCT 1 AGA 22.66 A
Met CAT 1 ATG 22.55 CGT 0 ACG 6.89 CTT 1 AAG 24.65 CCT 1 AGG 13.31 G
G Val AAC 0 GTT 16.42 Ala AGC 0 GCT 13.96 Asp ATC 0 GAT 37.86 Gly ACC 0 GGT 14.73 T
GAC 0 GTC 20.52 GGC 1 GCC 15.70 GTC 1 GAC 33.57 GCC 1 GGC 21.15 C
TAC 1 GTA 20.89 TGC 1 GCA 22.43 Glu TTC 1 GAA 65.22 TCC 1 GGA 31.10 A
CAC 0 GTG 10.07 CGC 1 GCG 9.00 CTC 0 GAG 49.27 CCC 0 GGG 6.33 G



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