Composite table

Chlamydiae


[Important Notice]
This table can browse both anticodon number and codon usage concurrently.
When you consider the correlation of codon usage with anticodon number (i.e., number of tRNA genes having the respective anticodon), you have to pay attention to "wobble pairing" between the codon third position and the anticodon first position. For example, G base at the anticodon first position can pair with either U or C at the codon third position, and thus one anticodon can recognize two codons. U at the anticodon first position can pair with either A or G at the codon third position, and thus the anticodon also can recognize two codons. Furthermore, there exist the cases where the anticodon first position is enzymatically modified resulting in change of the codon recognition pattern.
Number of tRNA genes / Codon usage (permillage)
T C A G
AA anti
codon		 tRNA codon usage AA anti
codon		 tRNA codon usage AA anti
codon		 tRNA codon usage AA anti
codon		 tRNA codon usage
T phe AAA 0 TTT 35.20 Ser AGA 0 TCT 20.55 Tyr ATA 0 TAT 26.99 Cys ACA 0 TGT 7.36 T
GAA 0 TTC 8.10 GGA 0 TCC 6.35 GTA 1 TAC 11.03 GCA 1 TGC 4.92 C
Leu TAA 0 TTA 38.86 TGA 0 TCA 10.47 ochre TTA 0 TAA 1.79 opal Sec TCA 0 TGA 0.78 A
CAA 0 TTG 13.72 CGA 0 TCG 4.40 amber CTA 0 TAG 0.60 Trp CCA 0 TGG 9.15 G
C Leu AAG 0 CTT 27.98 Pro AGG 0 CCT 20.13 His ATG 0 CAT 19.16 Arg ACG 0 CGT 8.58 T
GAG 0 CTC 6.26 GGG 0 CCC 6.56 GTG 1 CAC 6.05 GCG 0 CGC 6.49 C
TAG 0 CTA 17.76 TGG 0 CCA 6.25 Gln TTG 0 CAA 34.11 TCG 0 CGA 4.74 A
CAG 0 CTG 7.37 CGG 0 CCG 2.10 CTG 0 CAG 11.61 CCG 0 CGG 2.23 G
A Ile AAT 0 ATT 38.30 Thr AGT 0 ACT 16.26 Asn ATT 0 AAT 35.95 Ser ACT 0 AGT 9.80 T
GAT 0 ATC 17.12 GGT 0 ACC 9.82 GTT 0 AAC 16.28 GCT 0 AGC 12.87 C
TAT 0 ATA 20.54 TGT 2 ACA 14.06 Lys TTT 0 AAA 57.33 Arg TCT 0 AGA 13.73 A
Met CAT 0 ATG 19.42 CGT 0 ACG 6.09 CTT 0 AAG 24.02 CCT 0 AGG 6.62 G
G Val AAC 0 GTT 15.41 Ala AGC 0 GCT 29.78 Asp ATC 0 GAT 34.35 Gly ACC 0 GGT 14.41 T
GAC 0 GTC 7.48 GGC 0 GCC 14.29 GTC 1 GAC 10.58 GCC 0 GGC 14.83 C
TAC 1 GTA 15.78 TGC 0 GCA 19.46 Glu TTC 0 GAA 47.90 TCC 0 GGA 18.81 A
CAC 0 GTG 11.51 CGC 0 GCG 8.39 CTC 0 GAG 22.18 CCC 0 GGG 9.01 G



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