Home | tRNADB-CE : tRNA gene database curated manually by experts

Composite table

Chloroflexi


[Important Notice]
This table can browse both anticodon number and codon usage concurrently.
When you consider the correlation of codon usage with anticodon number (i.e., number of tRNA genes having the respective anticodon), you have to pay attention to "wobble pairing" between the codon third position and the anticodon first position. For example, G base at the anticodon first position can pair with either U or C at the codon third position, and thus one anticodon can recognize two codons. U at the anticodon first position can pair with either A or G at the codon third position, and thus the anticodon also can recognize two codons. Furthermore, there exist the cases where the anticodon first position is enzymatically modified resulting in change of the codon recognition pattern.
Number of tRNA genes / Codon usage (permillage)
T C A G
AA anti
codon
tRNA codon usage AA anti
codon
tRNA codon usage AA anti
codon
tRNA codon usage AA anti
codon
tRNA codon usage
T phe AAA 0 TTT 16.28 Ser AGA 0 TCT 5.73 Tyr ATA 0 TAT 13.29 Cys ACA 0 TGT 3.30 T
GAA 0 TTC 20.67 GGA 0 TCC 10.08 GTA 0 TAC 14.86 GCA 0 TGC 6.09 C
Leu TAA 0 TTA 7.57 TGA 0 TCA 6.47 ochre TTA 0 TAA 1.12 opal Sec TCA 0 TGA 1.23 A
CAA 0 TTG 17.01 CGA 0 TCG 11.20 amber CTA 0 TAG 0.89 Trp CCA 0 TGG 14.26 G
C Leu AAG 0 CTT 13.03 Pro AGG 0 CCT 8.25 His ATG 0 CAT 9.12 Arg ACG 0 CGT 10.00 T
GAG 0 CTC 22.55 GGG 0 CCC 15.11 GTG 0 CAC 11.10 GCG 0 CGC 27.12 C
TAG 0 CTA 4.35 TGG 0 CCA 8.04 Gln TTG 0 CAA 12.41 TCG 0 CGA 5.36 A
CAG 0 CTG 42.05 CGG 0 CCG 20.89 CTG 0 CAG 24.13 CCG 0 CGG 14.52 G
A Ile AAT 0 ATT 19.60 Thr AGT 0 ACT 7.67 Asn ATT 0 AAT 13.77 Ser ACT 0 AGT 6.45 T
GAT 0 ATC 31.46 GGT 0 ACC 24.52 GTT 0 AAC 17.06 GCT 0 AGC 15.51 C
TAT 0 ATA 9.04 TGT 0 ACA 7.93 Lys TTT 1 AAA 18.68 Arg TCT 0 AGA 3.73 A
Met CAT 1 ATG 22.31 CGT 0 ACG 14.62 CTT 1 AAG 17.34 CCT 0 AGG 4.55 G
G Val AAC 0 GTT 13.90 Ala AGC 0 GCT 16.44 Asp ATC 0 GAT 26.40 Gly ACC 0 GGT 16.53 T
GAC 0 GTC 23.86 GGC 0 GCC 40.34 GTC 0 GAC 25.10 GCC 0 GGC 34.23 C
TAC 0 GTA 9.95 TGC 0 GCA 15.04 Glu TTC 0 GAA 31.08 TCC 0 GGA 11.52 A
CAC 0 GTG 26.88 CGC 0 GCG 30.36 CTC 0 GAG 29.83 CCC 0 GGG 16.24 G



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