Home | tRNADB-CE : tRNA gene database curated manually by experts

Composite table

Deinococcus-Thermus


[Important Notice]
This table can browse both anticodon number and codon usage concurrently.
When you consider the correlation of codon usage with anticodon number (i.e., number of tRNA genes having the respective anticodon), you have to pay attention to "wobble pairing" between the codon third position and the anticodon first position. For example, G base at the anticodon first position can pair with either U or C at the codon third position, and thus one anticodon can recognize two codons. U at the anticodon first position can pair with either A or G at the codon third position, and thus the anticodon also can recognize two codons. Furthermore, there exist the cases where the anticodon first position is enzymatically modified resulting in change of the codon recognition pattern.
Number of tRNA genes / Codon usage (permillage)
T C A G
AA anti
codon
tRNA codon usage AA anti
codon
tRNA codon usage AA anti
codon
tRNA codon usage AA anti
codon
tRNA codon usage
T phe AAA 0 TTT 9.35 Ser AGA 0 TCT 1.90 Tyr ATA 0 TAT 3.84 Cys ACA 0 TGT 1.00 T
GAA 30 TTC 24.10 GGA 30 TCC 10.24 GTA 35 TAC 21.44 GCA 30 TGC 4.89 C
Leu TAA 30 TTA 1.77 TGA 30 TCA 1.69 ochre TTA 0 TAA 0.72 opal Sec TCA 0 TGA 2.00 A
CAA 30 TTG 9.39 CGA 30 TCG 8.76 amber CTA 0 TAG 0.82 Trp CCA 30 TGG 14.14 G
C Leu AAG 0 CTT 9.32 Pro AGG 0 CCT 5.55 His ATG 0 CAT 3.52 Arg ACG 33 CGT 5.90 T
GAG 30 CTC 35.13 GGG 30 CCC 32.15 GTG 30 CAC 17.30 GCG 0 CGC 37.52 C
TAG 30 CTA 3.15 TGG 30 CCA 3.46 Gln TTG 30 CAA 5.36 TCG 0 CGA 2.88 A
CAG 31 CTG 64.61 CGG 30 CCG 19.70 CTG 30 CAG 29.63 CCG 30 CGG 24.82 G
A Ile AAT 0 ATT 6.70 Thr AGT 0 ACT 2.41 Asn ATT 0 AAT 3.38 Ser ACT 0 AGT 3.16 T
GAT 30 ATC 25.53 GGT 30 ACC 32.77 GTT 30 AAC 18.75 GCT 30 AGC 20.28 C
TAT 5 ATA 2.00 TGT 30 ACA 2.16 Lys TTT 30 AAA 7.45 Arg TCT 30 AGA 1.47 A
Met CAT 92 ATG 16.78 CGT 30 ACG 15.10 CTT 30 AAG 22.16 CCT 30 AGG 6.32 G
G Val AAC 0 GTT 4.76 Ala AGC 0 GCT 8.13 Asp ATC 0 GAT 8.22 Gly ACC 0 GGT 7.88 T
GAC 31 GTC 23.32 GGC 32 GCC 66.25 GTC 51 GAC 36.56 GCC 71 GGC 46.61 C
TAC 30 GTA 4.04 TGC 30 GCA 6.62 Glu TTC 32 GAA 18.58 TCC 30 GGA 7.40 A
CAC 30 GTG 46.07 CGC 30 GCG 38.11 CTC 26 GAG 46.36 CCC 29 GGG 28.65 G



BACK