Home | tRNADB-CE : tRNA gene database curated manually by experts

Composite table

Deinococcus-Thermus


[Important Notice]
This table can browse both anticodon number and codon usage concurrently.
When you consider the correlation of codon usage with anticodon number (i.e., number of tRNA genes having the respective anticodon), you have to pay attention to "wobble pairing" between the codon third position and the anticodon first position. For example, G base at the anticodon first position can pair with either U or C at the codon third position, and thus one anticodon can recognize two codons. U at the anticodon first position can pair with either A or G at the codon third position, and thus the anticodon also can recognize two codons. Furthermore, there exist the cases where the anticodon first position is enzymatically modified resulting in change of the codon recognition pattern.
Number of tRNA genes / Codon usage (permillage)
T C A G
AA anti
codon
tRNA codon usage AA anti
codon
tRNA codon usage AA anti
codon
tRNA codon usage AA anti
codon
tRNA codon usage
T phe AAA 0 TTT 9.35 Ser AGA 0 TCT 1.90 Tyr ATA 0 TAT 3.84 Cys ACA 0 TGT 1.00 T
GAA 0 TTC 24.10 GGA 0 TCC 10.24 GTA 0 TAC 21.44 GCA 0 TGC 4.89 C
Leu TAA 0 TTA 1.77 TGA 0 TCA 1.69 ochre TTA 0 TAA 0.72 opal Sec TCA 0 TGA 2.00 A
CAA 0 TTG 9.39 CGA 0 TCG 8.76 amber CTA 0 TAG 0.82 Trp CCA 4 TGG 14.14 G
C Leu AAG 0 CTT 9.32 Pro AGG 0 CCT 5.55 His ATG 0 CAT 3.52 Arg ACG 0 CGT 5.90 T
GAG 0 CTC 35.13 GGG 0 CCC 32.15 GTG 0 CAC 17.30 GCG 0 CGC 37.52 C
TAG 0 CTA 3.15 TGG 0 CCA 3.46 Gln TTG 0 CAA 5.36 TCG 0 CGA 2.88 A
CAG 0 CTG 64.61 CGG 0 CCG 19.70 CTG 0 CAG 29.63 CCG 0 CGG 24.82 G
A Ile AAT 0 ATT 6.70 Thr AGT 0 ACT 2.41 Asn ATT 0 AAT 3.38 Ser ACT 0 AGT 3.16 T
GAT 0 ATC 25.53 GGT 0 ACC 32.77 GTT 0 AAC 18.75 GCT 0 AGC 20.28 C
TAT 0 ATA 2.00 TGT 0 ACA 2.16 Lys TTT 0 AAA 7.45 Arg TCT 0 AGA 1.47 A
Met CAT 1 ATG 16.78 CGT 0 ACG 15.10 CTT 0 AAG 22.16 CCT 0 AGG 6.32 G
G Val AAC 0 GTT 4.76 Ala AGC 0 GCT 8.13 Asp ATC 0 GAT 8.22 Gly ACC 0 GGT 7.88 T
GAC 0 GTC 23.32 GGC 0 GCC 66.25 GTC 0 GAC 36.56 GCC 0 GGC 46.61 C
TAC 0 GTA 4.04 TGC 0 GCA 6.62 Glu TTC 0 GAA 18.58 TCC 0 GGA 7.40 A
CAC 0 GTG 46.07 CGC 0 GCG 38.11 CTC 0 GAG 46.36 CCC 0 GGG 28.65 G



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