Composite table

Deinococcus-Thermus


[Important Notice]
This table can browse both anticodon number and codon usage concurrently.
When you consider the correlation of codon usage with anticodon number (i.e., number of tRNA genes having the respective anticodon), you have to pay attention to "wobble pairing" between the codon third position and the anticodon first position. For example, G base at the anticodon first position can pair with either U or C at the codon third position, and thus one anticodon can recognize two codons. U at the anticodon first position can pair with either A or G at the codon third position, and thus the anticodon also can recognize two codons. Furthermore, there exist the cases where the anticodon first position is enzymatically modified resulting in change of the codon recognition pattern.
Number of tRNA genes / Codon usage (permillage)
T C A G
AA anti
codon		 tRNA codon usage AA anti
codon		 tRNA codon usage AA anti
codon		 tRNA codon usage AA anti
codon		 tRNA codon usage
T phe AAA 0 TTT 7.56 Ser AGA 0 TCT 2.47 Tyr ATA 0 TAT 3.71 Cys ACA 0 TGT 1.34 T
GAA 0 TTC 24.93 GGA 0 TCC 10.78 GTA 0 TAC 20.15 GCA 1 TGC 5.90 C
Leu TAA 0 TTA 1.34 TGA 0 TCA 2.65 ochre TTA 0 TAA 0.61 opal Sec TCA 0 TGA 2.24 A
CAA 0 TTG 9.48 CGA 0 TCG 8.46 amber CTA 0 TAG 0.51 Trp CCA 4 TGG 15.75 G
C Leu AAG 0 CTT 7.81 Pro AGG 0 CCT 5.72 His ATG 0 CAT 4.73 Arg ACG 0 CGT 6.50 T
GAG 0 CTC 33.16 GGG 0 CCC 25.91 GTG 1 CAC 18.95 GCG 0 CGC 34.35 C
TAG 0 CTA 2.13 TGG 1 CCA 4.76 Gln TTG 0 CAA 6.84 TCG 0 CGA 3.53 A
CAG 0 CTG 68.37 CGG 0 CCG 23.22 CTG 0 CAG 34.86 CCG 0 CGG 24.85 G
A Ile AAT 0 ATT 7.10 Thr AGT 0 ACT 3.82 Asn ATT 0 AAT 4.42 Ser ACT 0 AGT 5.65 T
GAT 0 ATC 24.21 GGT 0 ACC 33.66 GTT 0 AAC 18.52 GCT 0 AGC 21.95 C
TAT 0 ATA 1.04 TGT 0 ACA 3.12 Lys TTT 0 AAA 8.48 Arg TCT 0 AGA 1.86 A
Met CAT 2 ATG 17.18 CGT 0 ACG 18.36 CTT 0 AAG 17.80 CCT 0 AGG 5.35 G
G Val AAC 0 GTT 5.36 Ala AGC 0 GCT 10.08 Asp ATC 0 GAT 9.56 Gly ACC 0 GGT 8.32 T
GAC 0 GTC 26.10 GGC 0 GCC 62.49 GTC 1 GAC 38.81 GCC 1 GGC 45.87 C
TAC 0 GTA 2.84 TGC 0 GCA 7.57 Glu TTC 1 GAA 19.52 TCC 0 GGA 7.77 A
CAC 0 GTG 41.79 CGC 0 GCG 39.19 CTC 0 GAG 36.10 CCC 0 GGG 22.59 G



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