Home | tRNADB-CE : tRNA gene database curated manually by experts

Composite table

Gemmatimonadetes


[Important Notice]
This table can browse both anticodon number and codon usage concurrently.
When you consider the correlation of codon usage with anticodon number (i.e., number of tRNA genes having the respective anticodon), you have to pay attention to "wobble pairing" between the codon third position and the anticodon first position. For example, G base at the anticodon first position can pair with either U or C at the codon third position, and thus one anticodon can recognize two codons. U at the anticodon first position can pair with either A or G at the codon third position, and thus the anticodon also can recognize two codons. Furthermore, there exist the cases where the anticodon first position is enzymatically modified resulting in change of the codon recognition pattern.
Number of tRNA genes / Codon usage (permillage)
T C A G
AA anti
codon
tRNA codon usage AA anti
codon
tRNA codon usage AA anti
codon
tRNA codon usage AA anti
codon
tRNA codon usage
T phe AAA 0 TTT 4.72 Ser AGA 0 TCT 1.50 Tyr ATA 0 TAT 5.28 Cys ACA 0 TGT 1.44 T
GAA 3 TTC 28.95 GGA 3 TCC 10.09 GTA 3 TAC 18.10 GCA 3 TGC 5.99 C
Leu TAA 3 TTA 0.69 TGA 3 TCA 2.21 ochre TTA 0 TAA 0.36 opal Sec TCA 0 TGA 1.86 A
CAA 3 TTG 8.97 CGA 3 TCG 18.84 amber CTA 0 TAG 0.81 Trp CCA 3 TGG 15.00 G
C Leu AAG 0 CTT 3.85 Pro AGG 0 CCT 3.01 His ATG 0 CAT 4.86 Arg ACG 3 CGT 7.70 T
GAG 3 CTC 43.56 GGG 3 CCC 18.70 GTG 3 CAC 15.78 GCG 0 CGC 41.70 C
TAG 3 CTA 1.66 TGG 3 CCA 3.54 Gln TTG 3 CAA 4.37 TCG 0 CGA 5.73 A
CAG 3 CTG 45.32 CGG 3 CCG 30.78 CTG 3 CAG 26.64 CCG 3 CGG 25.52 G
A Ile AAT 0 ATT 5.41 Thr AGT 0 ACT 2.40 Asn ATT 0 AAT 4.34 Ser ACT 0 AGT 2.99 T
GAT 3 ATC 34.49 GGT 3 ACC 22.80 GTT 6 AAC 17.13 GCT 3 AGC 14.97 C
TAT 0 ATA 1.00 TGT 3 ACA 2.99 Lys TTT 3 AAA 3.60 Arg TCT 3 AGA 1.23 A
Met CAT 9 ATG 17.56 CGT 3 ACG 28.08 CTT 3 AAG 19.49 CCT 3 AGG 2.77 G
G Val AAC 0 GTT 4.27 Ala AGC 0 GCT 6.56 Asp ATC 0 GAT 14.75 Gly ACC 0 GGT 10.06 T
GAC 3 GTC 33.88 GGC 3 GCC 49.67 GTC 4 GAC 39.57 GCC 6 GGC 46.31 C
TAC 3 GTA 3.48 TGC 3 GCA 8.41 Glu TTC 3 GAA 12.54 TCC 3 GGA 9.40 A
CAC 3 GTG 44.26 CGC 3 GCG 63.23 CTC 3 GAG 41.92 CCC 3 GGG 22.90 G



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