Composite table

Haptophyceae


[Important Notice]
This table can browse both anticodon number and codon usage concurrently.
When you consider the correlation of codon usage with anticodon number (i.e., number of tRNA genes having the respective anticodon), you have to pay attention to "wobble pairing" between the codon third position and the anticodon first position. For example, G base at the anticodon first position can pair with either U or C at the codon third position, and thus one anticodon can recognize two codons. U at the anticodon first position can pair with either A or G at the codon third position, and thus the anticodon also can recognize two codons. Furthermore, there exist the cases where the anticodon first position is enzymatically modified resulting in change of the codon recognition pattern.
Number of tRNA genes / Codon usage (permillage)
T C A G
AA anti
codon
tRNA codon usage AA anti
codon
tRNA codon usage AA anti
codon
tRNA codon usage AA anti
codon
tRNA codon usage
T phe AAA 0 TTT 33.44 Ser AGA 0 TCT 17.72 Tyr ATA 0 TAT 20.20 Cys ACA 0 TGT 6.65 T
GAA 4 TTC 14.48 GGA 0 TCC 4.09 GTA 4 TAC 11.27 GCA 4 TGC 1.88 C
Leu TAA 4 TTA 51.02 TGA 4 TCA 18.22 ochre TTA 0 TAA 3.39 opal Sec TCA 0 TGA 0.09 A
CAA 1 TTG 7.51 CGA 0 TCG 6.00 amber CTA 0 TAG 0.89 Trp CCA 4 TGG 11.81 G
C Leu AAG 0 CTT 24.47 Pro AGG 0 CCT 14.58 His ATG 0 CAT 7.93 Arg ACG 4 CGT 19.63 T
GAG 0 CTC 2.80 GGG 0 CCC 3.12 GTG 4 CAC 7.28 GCG 0 CGC 4.63 C
TAG 4 CTA 17.62 TGG 4 CCA 16.24 Gln TTG 4 CAA 29.88 TCG 0 CGA 9.15 A
CAG 0 CTG 3.36 CGG 0 CCG 4.31 CTG 0 CAG 7.82 CCG 3 CGG 1.66 G
A Ile AAT 0 ATT 46.98 Thr AGT 0 ACT 19.50 Asn ATT 0 AAT 30.71 Ser ACT 0 AGT 15.40 T
GAT 5 ATC 13.79 GGT 0 ACC 4.55 GTT 4 AAC 15.99 GCT 4 AGC 5.81 C
TAT 0 ATA 18.87 TGT 4 ACA 26.52 Lys TTT 4 AAA 49.57 Arg TCT 4 AGA 12.41 A
Met CAT 9 ATG 19.84 CGT 0 ACG 7.14 CTT 0 AAG 16.34 CCT 0 AGG 2.81 G
G Val AAC 0 GTT 33.07 Ala AGC 0 GCT 27.89 Asp ATC 0 GAT 32.26 Gly ACC 0 GGT 39.30 T
GAC 0 GTC 4.84 GGC 0 GCC 7.39 GTC 4 GAC 10.34 GCC 4 GGC 7.53 C
TAC 4 GTA 24.53 TGC 5 GCA 25.68 Glu TTC 3 GAA 43.53 TCC 4 GGA 17.21 A
CAC 0 GTG 6.15 CGC 0 GCG 8.27 CTC 0 GAG 15.12 CCC 0 GGG 7.52 G



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