Home | tRNADB-CE : tRNA gene database curated manually by experts

Composite table

Haptophyceae


[Important Notice]
This table can browse both anticodon number and codon usage concurrently.
When you consider the correlation of codon usage with anticodon number (i.e., number of tRNA genes having the respective anticodon), you have to pay attention to "wobble pairing" between the codon third position and the anticodon first position. For example, G base at the anticodon first position can pair with either U or C at the codon third position, and thus one anticodon can recognize two codons. U at the anticodon first position can pair with either A or G at the codon third position, and thus the anticodon also can recognize two codons. Furthermore, there exist the cases where the anticodon first position is enzymatically modified resulting in change of the codon recognition pattern.
Number of tRNA genes / Codon usage (permillage)
T C A G
AA anti
codon
tRNA codon usage AA anti
codon
tRNA codon usage AA anti
codon
tRNA codon usage AA anti
codon
tRNA codon usage
T phe AAA 0 TTT 31.66 Ser AGA 0 TCT 13.42 Tyr ATA 0 TAT 20.82 Cys ACA 0 TGT 6.39 T
GAA 1 TTC 15.40 GGA 0 TCC 4.45 GTA 1 TAC 10.28 GCA 1 TGC 1.94 C
Leu TAA 1 TTA 56.89 TGA 1 TCA 19.77 ochre TTA 0 TAA 3.74 opal Sec TCA 0 TGA 0.07 A
CAA 0 TTG 6.24 CGA 0 TCG 6.50 amber CTA 0 TAG 0.64 Trp CCA 1 TGG 11.77 G
C Leu AAG 0 CTT 21.87 Pro AGG 0 CCT 12.45 His ATG 0 CAT 6.88 Arg ACG 1 CGT 21.90 T
GAG 0 CTC 3.21 GGG 0 CCC 2.95 GTG 1 CAC 7.81 GCG 0 CGC 4.60 C
TAG 1 CTA 17.53 TGG 1 CCA 18.73 Gln TTG 1 CAA 32.33 TCG 0 CGA 10.65 A
CAG 0 CTG 2.88 CGG 0 CCG 4.75 CTG 0 CAG 6.99 CCG 1 CGG 2.73 G
A Ile AAT 0 ATT 52.03 Thr AGT 0 ACT 18.17 Asn ATT 0 AAT 31.96 Ser ACT 0 AGT 16.00 T
GAT 2 ATC 13.87 GGT 0 ACC 4.82 GTT 1 AAC 14.95 GCT 1 AGC 5.91 C
TAT 0 ATA 9.34 TGT 1 ACA 28.45 Lys TTT 1 AAA 48.56 Arg TCT 1 AGA 8.37 A
Met CAT 3 ATG 19.36 CGT 0 ACG 8.71 CTT 0 AAG 14.24 CCT 0 AGG 1.50 G
G Val AAC 0 GTT 35.40 Ala AGC 0 GCT 25.64 Asp ATC 0 GAT 32.71 Gly ACC 0 GGT 37.27 T
GAC 0 GTC 4.90 GGC 0 GCC 7.92 GTC 1 GAC 9.08 GCC 1 GGC 7.77 C
TAC 1 GTA 22.95 TGC 2 GCA 28.30 Glu TTC 1 GAA 45.19 TCC 1 GGA 20.26 A
CAC 0 GTG 6.77 CGC 0 GCG 9.61 CTC 0 GAG 13.83 CCC 0 GGG 7.92 G



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