Composite table

Herpesvirales


[Important Notice]
This table can browse both anticodon number and codon usage concurrently.
When you consider the correlation of codon usage with anticodon number (i.e., number of tRNA genes having the respective anticodon), you have to pay attention to "wobble pairing" between the codon third position and the anticodon first position. For example, G base at the anticodon first position can pair with either U or C at the codon third position, and thus one anticodon can recognize two codons. U at the anticodon first position can pair with either A or G at the codon third position, and thus the anticodon also can recognize two codons. Furthermore, there exist the cases where the anticodon first position is enzymatically modified resulting in change of the codon recognition pattern.
Number of tRNA genes / Codon usage (permillage)
T C A G
AA anti
codon		 tRNA codon usage AA anti
codon		 tRNA codon usage AA anti
codon		 tRNA codon usage AA anti
codon		 tRNA codon usage
T phe AAA 0 TTT 14.15 Ser AGA 0 TCT 7.31 Tyr ATA 0 TAT 7.12 Cys ACA 0 TGT 5.75 T
GAA 0 TTC 21.81 GGA 0 TCC 16.59 GTA 0 TAC 20.04 GCA 0 TGC 14.28 C
Leu TAA 0 TTA 4.33 TGA 0 TCA 4.89 ochre TTA 0 TAA 0.68 opal Sec TCA 0 TGA 0.80 A
CAA 0 TTG 8.19 CGA 0 TCG 16.20 amber CTA 0 TAG 0.57 Trp CCA 0 TGG 11.09 G
C Leu AAG 0 CTT 6.30 Pro AGG 0 CCT 7.27 His ATG 0 CAT 5.11 Arg ACG 0 CGT 3.59 T
GAG 0 CTC 26.86 GGG 0 CCC 35.82 GTG 0 CAC 17.76 GCG 0 CGC 36.37 C
TAG 0 CTA 6.52 TGG 0 CCA 8.18 Gln TTG 0 CAA 6.82 TCG 0 CGA 5.07 A
CAG 0 CTG 44.48 CGG 0 CCG 27.52 CTG 0 CAG 20.75 CCG 0 CGG 21.89 G
A Ile AAT 0 ATT 7.88 Thr AGT 5 ACT 6.07 Asn ATT 0 AAT 7.08 Ser ACT 0 AGT 4.38 T
GAT 1 ATC 18.92 GGT 0 ACC 22.84 GTT 0 AAC 18.90 GCT 0 AGC 16.20 C
TAT 0 ATA 7.13 TGT 0 ACA 7.08 Lys TTT 0 AAA 10.80 Arg TCT 0 AGA 6.15 A
Met CAT 5 ATG 18.00 CGT 0 ACG 19.35 CTT 0 AAG 14.84 CCT 5 AGG 7.83 G
G Val AAC 0 GTT 7.24 Ala AGC 0 GCT 8.13 Asp ATC 0 GAT 11.39 Gly ACC 0 GGT 6.07 T
GAC 0 GTC 23.87 GGC 0 GCC 58.62 GTC 6 GAC 41.70 GCC 3 GGC 33.00 C
TAC 0 GTA 4.93 TGC 1 GCA 7.09 Glu TTC 0 GAA 14.11 TCC 0 GGA 9.68 A
CAC 0 GTG 30.79 CGC 0 GCG 50.82 CTC 0 GAG 39.24 CCC 0 GGG 25.75 G



BACK