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Composite table

Herpesvirales


[Important Notice]
This table can browse both anticodon number and codon usage concurrently.
When you consider the correlation of codon usage with anticodon number (i.e., number of tRNA genes having the respective anticodon), you have to pay attention to "wobble pairing" between the codon third position and the anticodon first position. For example, G base at the anticodon first position can pair with either U or C at the codon third position, and thus one anticodon can recognize two codons. U at the anticodon first position can pair with either A or G at the codon third position, and thus the anticodon also can recognize two codons. Furthermore, there exist the cases where the anticodon first position is enzymatically modified resulting in change of the codon recognition pattern.
Number of tRNA genes / Codon usage (permillage)
T C A G
AA anti
codon
tRNA codon usage AA anti
codon
tRNA codon usage AA anti
codon
tRNA codon usage AA anti
codon
tRNA codon usage
T phe AAA 0 TTT 18.34 Ser AGA 0 TCT 10.67 Tyr ATA 0 TAT 10.43 Cys ACA 0 TGT 8.40 T
GAA 0 TTC 19.27 GGA 0 TCC 14.06 GTA 0 TAC 17.45 GCA 0 TGC 13.22 C
Leu TAA 0 TTA 4.94 TGA 0 TCA 7.96 ochre TTA 0 TAA 0.78 opal Sec TCA 0 TGA 0.65 A
CAA 0 TTG 11.13 CGA 0 TCG 10.80 amber CTA 0 TAG 0.56 Trp CCA 0 TGG 10.83 G
C Leu AAG 0 CTT 8.60 Pro AGG 0 CCT 9.77 His ATG 0 CAT 6.95 Arg ACG 0 CGT 2.33 T
GAG 0 CTC 24.17 GGG 0 CCC 33.80 GTG 0 CAC 16.65 GCG 0 CGC 31.51 C
TAG 0 CTA 8.53 TGG 0 CCA 12.15 Gln TTG 0 CAA 8.60 TCG 0 CGA 3.35 A
CAG 0 CTG 42.74 CGG 0 CCG 22.88 CTG 0 CAG 20.61 CCG 0 CGG 18.97 G
A Ile AAT 0 ATT 11.27 Thr AGT 3 ACT 9.50 Asn ATT 0 AAT 10.73 Ser ACT 0 AGT 6.52 T
GAT 1 ATC 17.22 GGT 0 ACC 21.04 GTT 0 AAC 18.17 GCT 0 AGC 15.47 C
TAT 0 ATA 9.13 TGT 0 ACA 11.20 Lys TTT 0 AAA 14.38 Arg TCT 0 AGA 8.27 A
Met CAT 3 ATG 18.70 CGT 0 ACG 13.92 CTT 0 AAG 15.59 CCT 1 AGG 7.66 G
G Val AAC 0 GTT 8.70 Ala AGC 0 GCT 10.59 Asp ATC 0 GAT 13.78 Gly ACC 0 GGT 6.79 T
GAC 0 GTC 20.20 GGC 0 GCC 54.33 GTC 0 GAC 35.92 GCC 3 GGC 31.82 C
TAC 0 GTA 5.90 TGC 1 GCA 9.92 Glu TTC 0 GAA 16.05 TCC 0 GGA 10.47 A
CAC 0 GTG 29.40 CGC 0 GCG 45.61 CTC 0 GAG 37.13 CCC 0 GGG 23.52 G



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