Composite table

Iridoviridae


[Important Notice]
This table can browse both anticodon number and codon usage concurrently.
When you consider the correlation of codon usage with anticodon number (i.e., number of tRNA genes having the respective anticodon), you have to pay attention to "wobble pairing" between the codon third position and the anticodon first position. For example, G base at the anticodon first position can pair with either U or C at the codon third position, and thus one anticodon can recognize two codons. U at the anticodon first position can pair with either A or G at the codon third position, and thus the anticodon also can recognize two codons. Furthermore, there exist the cases where the anticodon first position is enzymatically modified resulting in change of the codon recognition pattern.
Number of tRNA genes / Codon usage (permillage)
T C A G
AA anti
codon		 tRNA codon usage AA anti
codon		 tRNA codon usage AA anti
codon		 tRNA codon usage AA anti
codon		 tRNA codon usage
T phe AAA 0 TTT 37.43 Ser AGA 0 TCT 19.83 Tyr ATA 0 TAT 23.22 Cys ACA 0 TGT 12.75 T
GAA 0 TTC 9.12 GGA 0 TCC 9.59 GTA 0 TAC 16.64 GCA 0 TGC 9.07 C
Leu TAA 0 TTA 32.19 TGA 0 TCA 13.09 ochre TTA 0 TAA 2.80 opal Sec TCA 0 TGA 0.94 A
CAA 0 TTG 19.99 CGA 0 TCG 10.23 amber CTA 0 TAG 0.66 Trp CCA 0 TGG 11.35 G
C Leu AAG 0 CTT 11.55 Pro AGG 0 CCT 13.88 His ATG 0 CAT 11.48 Arg ACG 0 CGT 5.91 T
GAG 0 CTC 9.26 GGG 0 CCC 12.08 GTG 0 CAC 9.41 GCG 0 CGC 6.25 C
TAG 0 CTA 7.94 TGG 0 CCA 12.72 Gln TTG 0 CAA 24.41 TCG 0 CGA 6.58 A
CAG 0 CTG 11.19 CGG 0 CCG 8.96 CTG 0 CAG 10.38 CCG 0 CGG 3.61 G
A Ile AAT 0 ATT 32.76 Thr AGT 0 ACT 14.57 Asn ATT 0 AAT 33.65 Ser ACT 0 AGT 9.75 T
GAT 0 ATC 12.60 GGT 0 ACC 13.78 GTT 0 AAC 22.33 GCT 0 AGC 8.37 C
TAT 3 ATA 24.18 TGT 0 ACA 20.11 Lys TTT 0 AAA 57.30 Arg TCT 0 AGA 16.03 A
Met CAT 0 ATG 25.03 CGT 0 ACG 13.39 CTT 0 AAG 17.83 CCT 0 AGG 5.25 G
G Val AAC 0 GTT 20.72 Ala AGC 0 GCT 14.71 Asp ATC 0 GAT 31.41 Gly ACC 0 GGT 14.36 T
GAC 0 GTC 10.67 GGC 0 GCC 13.60 GTC 0 GAC 21.73 GCC 0 GGC 10.16 C
TAC 0 GTA 16.25 TGC 0 GCA 13.77 Glu TTC 0 GAA 42.37 TCC 0 GGA 18.73 A
CAC 0 GTG 15.23 CGC 0 GCG 12.86 CTC 0 GAG 14.38 CCC 0 GGG 7.63 G



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