Home | tRNADB-CE : tRNA gene database curated manually by experts

Composite table

Nanohaloarchaeota


[Important Notice]
This table can browse both anticodon number and codon usage concurrently.
When you consider the correlation of codon usage with anticodon number (i.e., number of tRNA genes having the respective anticodon), you have to pay attention to "wobble pairing" between the codon third position and the anticodon first position. For example, G base at the anticodon first position can pair with either U or C at the codon third position, and thus one anticodon can recognize two codons. U at the anticodon first position can pair with either A or G at the codon third position, and thus the anticodon also can recognize two codons. Furthermore, there exist the cases where the anticodon first position is enzymatically modified resulting in change of the codon recognition pattern.
Number of tRNA genes / Codon usage (permillage)
T C A G
AA anti
codon
tRNA codon usage AA anti
codon
tRNA codon usage AA anti
codon
tRNA codon usage AA anti
codon
tRNA codon usage
T phe AAA 0 TTT 18.64 Ser AGA 0 TCT 15.52 Tyr ATA 0 TAT 14.42 Cys ACA 0 TGT 3.48 T
GAA 11 TTC 22.32 GGA 8 TCC 8.12 GTA 7 TAC 17.78 GCA 7 TGC 2.89 C
Leu TAA 5 TTA 14.34 TGA 8 TCA 18.83 ochre TTA 0 TAA 2.79 opal Sec TCA 0 TGA 2.03 A
CAA 8 TTG 12.34 CGA 5 TCG 7.06 amber CTA 0 TAG 1.57 Trp CCA 0 TGG 8.47 G
C Leu AAG 0 CTT 20.31 Pro AGG 0 CCT 15.44 His ATG 0 CAT 8.83 Arg ACG 0 CGT 3.53 T
GAG 7 CTC 10.07 GGG 2 CCC 2.59 GTG 10 CAC 6.94 GCG 12 CGC 1.85 C
TAG 7 CTA 14.61 TGG 8 CCA 9.18 Gln TTG 6 CAA 11.76 TCG 13 CGA 3.62 A
CAG 4 CTG 14.45 CGG 1 CCG 5.65 CTG 9 CAG 21.40 CCG 0 CGG 2.81 G
A Ile AAT 0 ATT 21.90 Thr AGT 0 ACT 14.63 Asn ATT 0 AAT 22.44 Ser ACT 0 AGT 9.84 T
GAT 8 ATC 20.67 GGT 6 ACC 8.96 GTT 3 AAC 21.31 GCT 10 AGC 11.13 C
TAT 0 ATA 23.30 TGT 3 ACA 19.49 Lys TTT 12 AAA 38.34 Arg TCT 8 AGA 26.87 A
Met CAT 9 ATG 24.60 CGT 5 ACG 4.92 CTT 5 AAG 23.91 CCT 4 AGG 9.98 G
G Val AAC 0 GTT 19.49 Ala AGC 0 GCT 15.02 Asp ATC 0 GAT 43.89 Gly ACC 0 GGT 13.85 T
GAC 6 GTC 14.39 GGC 9 GCC 12.67 GTC 7 GAC 24.24 GCC 9 GGC 17.72 C
TAC 10 GTA 22.64 TGC 5 GCA 23.23 Glu TTC 12 GAA 69.95 TCC 7 GGA 29.59 A
CAC 0 GTG 10.32 CGC 2 GCG 7.80 CTC 3 GAG 42.75 CCC 1 GGG 6.54 G



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