Composite table

Phycodnaviridae


[Important Notice]
This table can browse both anticodon number and codon usage concurrently.
When you consider the correlation of codon usage with anticodon number (i.e., number of tRNA genes having the respective anticodon), you have to pay attention to "wobble pairing" between the codon third position and the anticodon first position. For example, G base at the anticodon first position can pair with either U or C at the codon third position, and thus one anticodon can recognize two codons. U at the anticodon first position can pair with either A or G at the codon third position, and thus the anticodon also can recognize two codons. Furthermore, there exist the cases where the anticodon first position is enzymatically modified resulting in change of the codon recognition pattern.
Number of tRNA genes / Codon usage (permillage)
T C A G
AA anti
codon		 tRNA codon usage AA anti
codon		 tRNA codon usage AA anti
codon		 tRNA codon usage AA anti
codon		 tRNA codon usage
T phe AAA 0 TTT 24.62 Ser AGA 0 TCT 17.20 Tyr ATA 0 TAT 24.00 Cys ACA 0 TGT 9.77 T
GAA 10 TTC 20.20 GGA 0 TCC 10.30 GTA 14 TAC 16.06 GCA 0 TGC 6.68 C
Leu TAA 57 TTA 13.51 TGA 2 TCA 13.32 ochre TTA 0 TAA 2.31 opal Sec TCA 0 TGA 1.27 A
CAA 28 TTG 12.97 CGA 0 TCG 10.29 amber CTA 0 TAG 0.59 Trp CCA 0 TGG 10.96 G
C Leu AAG 2 CTT 15.36 Pro AGG 1 CCT 11.73 His ATG 2 CAT 10.92 Arg ACG 0 CGT 9.49 T
GAG 0 CTC 15.42 GGG 0 CCC 10.76 GTG 0 CAC 9.21 GCG 0 CGC 8.26 C
TAG 0 CTA 7.28 TGG 0 CCA 16.03 Gln TTG 18 CAA 17.08 TCG 0 CGA 5.60 A
CAG 0 CTG 10.84 CGG 0 CCG 8.02 CTG 7 CAG 12.81 CCG 0 CGG 4.21 G
A Ile AAT 4 ATT 28.65 Thr AGT 22 ACT 15.03 Asn ATT 0 AAT 34.01 Ser ACT 0 AGT 11.58 T
GAT 0 ATC 20.28 GGT 0 ACC 13.95 GTT 124 AAC 25.42 GCT 1 AGC 8.10 C
TAT 39 ATA 20.70 TGT 3 ACA 20.21 Lys TTT 19 AAA 39.32 Arg TCT 60 AGA 12.19 A
Met CAT 1 ATG 27.91 CGT 14 ACG 13.64 CTT 52 AAG 34.27 CCT 0 AGG 6.18 G
G Val AAC 1 GTT 20.02 Ala AGC 0 GCT 13.89 Asp ATC 0 GAT 34.29 Gly ACC 0 GGT 21.11 T
GAC 0 GTC 14.01 GGC 0 GCC 12.69 GTC 16 GAC 23.42 GCC 0 GGC 11.07 C
TAC 0 GTA 15.03 TGC 0 GCA 20.75 Glu TTC 1 GAA 34.80 TCC 45 GGA 18.38 A
CAC 0 GTG 18.34 CGC 0 GCG 13.75 CTC 0 GAG 20.09 CCC 0 GGG 9.85 G



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