Home | tRNADB-CE : tRNA gene database curated manually by experts

Composite table

Phycodnaviridae


[Important Notice]
This table can browse both anticodon number and codon usage concurrently.
When you consider the correlation of codon usage with anticodon number (i.e., number of tRNA genes having the respective anticodon), you have to pay attention to "wobble pairing" between the codon third position and the anticodon first position. For example, G base at the anticodon first position can pair with either U or C at the codon third position, and thus one anticodon can recognize two codons. U at the anticodon first position can pair with either A or G at the codon third position, and thus the anticodon also can recognize two codons. Furthermore, there exist the cases where the anticodon first position is enzymatically modified resulting in change of the codon recognition pattern.
Number of tRNA genes / Codon usage (permillage)
T C A G
AA anti
codon
tRNA codon usage AA anti
codon
tRNA codon usage AA anti
codon
tRNA codon usage AA anti
codon
tRNA codon usage
T phe AAA 0 TTT 25.56 Ser AGA 0 TCT 17.21 Tyr ATA 0 TAT 20.32 Cys ACA 0 TGT 11.01 T
GAA 1 TTC 23.55 GGA 0 TCC 12.65 GTA 10 TAC 14.53 GCA 0 TGC 8.92 C
Leu TAA 10 TTA 9.54 TGA 0 TCA 14.48 ochre TTA 0 TAA 2.18 opal Sec TCA 0 TGA 2.23 A
CAA 6 TTG 16.81 CGA 0 TCG 13.78 amber CTA 0 TAG 0.93 Trp CCA 0 TGG 11.60 G
C Leu AAG 0 CTT 17.27 Pro AGG 0 CCT 11.24 His ATG 0 CAT 13.09 Arg ACG 0 CGT 10.79 T
GAG 0 CTC 17.25 GGG 0 CCC 11.05 GTG 0 CAC 10.75 GCG 0 CGC 9.44 C
TAG 0 CTA 6.57 TGG 0 CCA 18.13 Gln TTG 3 CAA 15.51 TCG 0 CGA 8.25 A
CAG 0 CTG 12.62 CGG 0 CCG 10.39 CTG 2 CAG 13.05 CCG 0 CGG 5.54 G
A Ile AAT 0 ATT 25.38 Thr AGT 2 ACT 13.46 Asn ATT 0 AAT 27.89 Ser ACT 0 AGT 11.10 T
GAT 0 ATC 22.99 GGT 0 ACC 14.31 GTT 26 AAC 23.34 GCT 0 AGC 9.28 C
TAT 10 ATA 18.80 TGT 0 ACA 20.55 Lys TTT 6 AAA 32.29 Arg TCT 12 AGA 13.18 A
Met CAT 0 ATG 29.67 CGT 2 ACG 15.01 CTT 12 AAG 29.91 CCT 0 AGG 7.53 G
G Val AAC 0 GTT 19.19 Ala AGC 0 GCT 12.84 Asp ATC 0 GAT 29.69 Gly ACC 0 GGT 18.71 T
GAC 0 GTC 16.47 GGC 0 GCC 13.09 GTC 1 GAC 21.62 GCC 0 GGC 11.76 C
TAC 0 GTA 14.16 TGC 0 GCA 21.66 Glu TTC 0 GAA 29.35 TCC 9 GGA 18.05 A
CAC 0 GTG 19.23 CGC 0 GCG 13.93 CTC 0 GAG 19.06 CCC 0 GGG 10.25 G



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