Composite table

Rhodophyta


[Important Notice]
This table can browse both anticodon number and codon usage concurrently.
When you consider the correlation of codon usage with anticodon number (i.e., number of tRNA genes having the respective anticodon), you have to pay attention to "wobble pairing" between the codon third position and the anticodon first position. For example, G base at the anticodon first position can pair with either U or C at the codon third position, and thus one anticodon can recognize two codons. U at the anticodon first position can pair with either A or G at the codon third position, and thus the anticodon also can recognize two codons. Furthermore, there exist the cases where the anticodon first position is enzymatically modified resulting in change of the codon recognition pattern.
Number of tRNA genes / Codon usage (permillage)
T C A G
AA anti
codon
tRNA codon usage AA anti
codon
tRNA codon usage AA anti
codon
tRNA codon usage AA anti
codon
tRNA codon usage
T phe AAA 0 TTT 39.23 Ser AGA 0 TCT 25.47 Tyr ATA 0 TAT 32.91 Cys ACA 0 TGT 7.87 T
GAA 63 TTC 6.89 GGA 10 TCC 2.42 GTA 62 TAC 7.92 GCA 62 TGC 2.42 C
Leu TAA 63 TTA 61.31 TGA 63 TCA 17.60 ochre TTA 0 TAA 3.17 opal Sec TCA 0 TGA 0.35 A
CAA 62 TTG 10.84 CGA 3 TCG 2.16 amber CTA 0 TAG 0.79 Trp CCA 63 TGG 9.92 G
C Leu AAG 0 CTT 11.85 Pro AGG 0 CCT 15.50 His ATG 0 CAT 14.58 Arg ACG 62 CGT 8.24 T
GAG 6 CTC 1.81 GGG 0 CCC 1.71 GTG 63 CAC 3.39 GCG 0 CGC 1.78 C
TAG 63 CTA 15.23 TGG 62 CCA 13.61 Gln TTG 63 CAA 32.45 TCG 0 CGA 3.28 A
CAG 0 CTG 2.50 CGG 0 CCG 1.64 CTG 0 CAG 6.78 CCG 58 CGG 0.53 G
A Ile AAT 0 ATT 54.64 Thr AGT 0 ACT 20.96 Asn ATT 0 AAT 54.26 Ser ACT 0 AGT 18.29 T
GAT 65 ATC 8.93 GGT 19 ACC 2.58 GTT 63 AAC 11.56 GCT 63 AGC 5.62 C
TAT 0 ATA 43.06 TGT 63 ACA 24.31 Lys TTT 63 AAA 65.44 Arg TCT 63 AGA 24.09 A
Met CAT 80 ATG 20.28 CGT 0 ACG 2.65 CTT 0 AAG 12.59 CCT 3 AGG 3.61 G
G Val AAC 0 GTT 24.50 Ala AGC 0 GCT 25.59 Asp ATC 0 GAT 35.68 Gly ACC 0 GGT 26.55 T
GAC 42 GTC 3.28 GGC 2 GCC 3.03 GTC 63 GAC 6.34 GCC 62 GGC 6.20 C
TAC 62 GTA 22.14 TGC 69 GCA 23.43 Glu TTC 61 GAA 43.78 TCC 63 GGA 22.61 A
CAC 0 GTG 3.86 CGC 0 GCG 2.46 CTC 0 GAG 8.58 CCC 0 GGG 2.94 G



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