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Composite table

Rhodophyta


[Important Notice]
This table can browse both anticodon number and codon usage concurrently.
When you consider the correlation of codon usage with anticodon number (i.e., number of tRNA genes having the respective anticodon), you have to pay attention to "wobble pairing" between the codon third position and the anticodon first position. For example, G base at the anticodon first position can pair with either U or C at the codon third position, and thus one anticodon can recognize two codons. U at the anticodon first position can pair with either A or G at the codon third position, and thus the anticodon also can recognize two codons. Furthermore, there exist the cases where the anticodon first position is enzymatically modified resulting in change of the codon recognition pattern.
Number of tRNA genes / Codon usage (permillage)
T C A G
AA anti
codon
tRNA codon usage AA anti
codon
tRNA codon usage AA anti
codon
tRNA codon usage AA anti
codon
tRNA codon usage
T phe AAA 0 TTT 34.90 Ser AGA 0 TCT 23.98 Tyr ATA 0 TAT 28.26 Cys ACA 0 TGT 8.23 T
GAA 6 TTC 9.26 GGA 4 TCC 3.86 GTA 6 TAC 7.45 GCA 5 TGC 3.12 C
Leu TAA 6 TTA 53.64 TGA 6 TCA 15.94 ochre TTA 0 TAA 2.74 opal Sec TCA 0 TGA 0.61 A
CAA 6 TTG 14.96 CGA 2 TCG 3.12 amber CTA 0 TAG 0.91 Trp CCA 6 TGG 11.77 G
C Leu AAG 0 CTT 14.50 Pro AGG 0 CCT 16.77 His ATG 0 CAT 15.91 Arg ACG 6 CGT 8.96 T
GAG 5 CTC 3.40 GGG 0 CCC 2.45 GTG 6 CAC 3.98 GCG 0 CGC 2.80 C
TAG 6 CTA 15.01 TGG 6 CCA 13.84 Gln TTG 6 CAA 35.44 TCG 0 CGA 5.88 A
CAG 0 CTG 4.15 CGG 0 CCG 2.31 CTG 0 CAG 8.11 CCG 4 CGG 1.07 G
A Ile AAT 0 ATT 48.99 Thr AGT 0 ACT 20.75 Asn ATT 0 AAT 42.99 Ser ACT 0 AGT 17.23 T
GAT 8 ATC 11.74 GGT 6 ACC 4.55 GTT 6 AAC 10.76 GCT 6 AGC 7.15 C
TAT 0 ATA 30.22 TGT 6 ACA 22.13 Lys TTT 6 AAA 55.54 Arg TCT 6 AGA 23.16 A
Met CAT 16 ATG 22.30 CGT 0 ACG 3.84 CTT 0 AAG 13.34 CCT 2 AGG 4.10 G
G Val AAC 0 GTT 25.11 Ala AGC 0 GCT 28.89 Asp ATC 0 GAT 34.28 Gly ACC 0 GGT 24.62 T
GAC 6 GTC 6.11 GGC 1 GCC 6.48 GTC 6 GAC 7.58 GCC 5 GGC 8.65 C
TAC 6 GTA 21.91 TGC 8 GCA 25.14 Glu TTC 6 GAA 44.23 TCC 6 GGA 23.43 A
CAC 0 GTG 7.74 CGC 0 GCG 4.54 CTC 0 GAG 10.14 CCC 0 GGG 5.05 G



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