Home | tRNADB-CE : tRNA gene database curated manually by experts

Composite table

Thaumarchaeota


[Important Notice]
This table can browse both anticodon number and codon usage concurrently.
When you consider the correlation of codon usage with anticodon number (i.e., number of tRNA genes having the respective anticodon), you have to pay attention to "wobble pairing" between the codon third position and the anticodon first position. For example, G base at the anticodon first position can pair with either U or C at the codon third position, and thus one anticodon can recognize two codons. U at the anticodon first position can pair with either A or G at the codon third position, and thus the anticodon also can recognize two codons. Furthermore, there exist the cases where the anticodon first position is enzymatically modified resulting in change of the codon recognition pattern.
Number of tRNA genes / Codon usage (permillage)
T C A G
AA anti
codon
tRNA codon usage AA anti
codon
tRNA codon usage AA anti
codon
tRNA codon usage AA anti
codon
tRNA codon usage
T phe AAA 0 TTT 31.35 Ser AGA 0 TCT 18.61 Tyr ATA 0 TAT 19.56 Cys ACA 0 TGT 6.22 T
GAA 12 TTC 11.24 GGA 23 TCC 6.14 GTA 18 TAC 12.17 GCA 15 TGC 3.97 C
Leu TAA 0 TTA 21.78 TGA 9 TCA 22.46 ochre TTA 0 TAA 1.94 opal Sec TCA 0 TGA 1.06 A
CAA 21 TTG 15.06 CGA 11 TCG 5.51 amber CTA 0 TAG 1.20 Trp CCA 5 TGG 9.15 G
C Leu AAG 0 CTT 19.49 Pro AGG 0 CCT 11.44 His ATG 0 CAT 11.36 Arg ACG 0 CGT 3.89 T
GAG 14 CTC 7.42 GGG 12 CCC 3.75 GTG 14 CAC 6.93 GCG 15 CGC 3.94 C
TAG 14 CTA 12.93 TGG 14 CCA 17.70 Gln TTG 9 CAA 21.11 TCG 6 CGA 4.13 A
CAG 9 CTG 10.22 CGG 7 CCG 5.06 CTG 7 CAG 10.91 CCG 1 CGG 1.74 G
A Ile AAT 0 ATT 41.02 Thr AGT 0 ACT 17.69 Asn ATT 0 AAT 30.52 Ser ACT 0 AGT 10.63 T
GAT 14 ATC 18.16 GGT 12 ACC 8.35 GTT 9 AAC 17.72 GCT 14 AGC 8.34 C
TAT 0 ATA 25.68 TGT 14 ACA 23.49 Lys TTT 14 AAA 56.10 Arg TCT 3 AGA 18.51 A
Met CAT 31 ATG 25.51 CGT 14 ACG 5.76 CTT 13 AAG 24.15 CCT 3 AGG 7.38 G
G Val AAC 0 GTT 22.26 Ala AGC 0 GCT 13.53 Asp ATC 0 GAT 38.03 Gly ACC 0 GGT 17.21 T
GAC 14 GTC 11.13 GGC 14 GCC 9.91 GTC 8 GAC 19.00 GCC 14 GGC 15.47 C
TAC 14 GTA 21.91 TGC 18 GCA 35.02 Glu TTC 4 GAA 46.09 TCC 10 GGA 26.85 A
CAC 9 GTG 11.51 CGC 13 GCG 7.33 CTC 11 GAG 19.91 CCC 13 GGG 6.40 G



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