Home | tRNADB-CE : tRNA gene database curated manually by experts

Composite table

Thermobaculum


[Important Notice]
This table can browse both anticodon number and codon usage concurrently.
When you consider the correlation of codon usage with anticodon number (i.e., number of tRNA genes having the respective anticodon), you have to pay attention to "wobble pairing" between the codon third position and the anticodon first position. For example, G base at the anticodon first position can pair with either U or C at the codon third position, and thus one anticodon can recognize two codons. U at the anticodon first position can pair with either A or G at the codon third position, and thus the anticodon also can recognize two codons. Furthermore, there exist the cases where the anticodon first position is enzymatically modified resulting in change of the codon recognition pattern.
Number of tRNA genes / Codon usage (permillage)
T C A G
AA anti
codon
tRNA codon usage AA anti
codon
tRNA codon usage AA anti
codon
tRNA codon usage AA anti
codon
tRNA codon usage
T phe AAA 0 TTT 11.79 Ser AGA 0 TCT 11.11 Tyr ATA 0 TAT 12.62 Cys ACA 0 TGT 3.38 T
GAA 1 TTC 21.34 GGA 1 TCC 12.78 GTA 1 TAC 19.55 GCA 1 TGC 5.49 C
Leu TAA 1 TTA 7.29 TGA 1 TCA 6.96 ochre TTA 0 TAA 0.85 opal Sec TCA 1 TGA 0.82 A
CAA 1 TTG 13.32 CGA 1 TCG 8.57 amber CTA 0 TAG 1.40 Trp CCA 1 TGG 16.01 G
C Leu AAG 0 CTT 15.00 Pro AGG 0 CCT 14.58 His ATG 0 CAT 9.20 Arg ACG 0 CGT 6.19 T
GAG 1 CTC 19.61 GGG 1 CCC 15.87 GTG 1 CAC 11.72 GCG 1 CGC 12.85 C
TAG 1 CTA 14.77 TGG 1 CCA 11.01 Gln TTG 1 CAA 10.16 TCG 1 CGA 5.22 A
CAG 1 CTG 38.18 CGG 2 CCG 10.22 CTG 1 CAG 24.62 CCG 1 CGG 7.31 G
A Ile AAT 0 ATT 9.21 Thr AGT 0 ACT 12.22 Asn ATT 0 AAT 10.86 Ser ACT 0 AGT 6.95 T
GAT 2 ATC 22.96 GGT 1 ACC 17.66 GTT 1 AAC 18.24 GCT 1 AGC 16.71 C
TAT 0 ATA 28.67 TGT 1 ACA 9.03 Lys TTT 1 AAA 10.23 Arg TCT 1 AGA 14.75 A
Met CAT 3 ATG 22.01 CGT 1 ACG 10.48 CTT 1 AAG 25.86 CCT 1 AGG 21.79 G
G Val AAC 0 GTT 12.47 Ala AGC 0 GCT 25.53 Asp ATC 0 GAT 28.62 Gly ACC 0 GGT 17.81 T
GAC 1 GTC 16.13 GGC 1 GCC 28.28 GTC 1 GAC 23.43 GCC 1 GGC 26.03 C
TAC 1 GTA 18.74 TGC 2 GCA 16.78 Glu TTC 1 GAA 19.59 TCC 1 GGA 16.16 A
CAC 2 GTG 31.12 CGC 1 GCG 18.27 CTC 1 GAG 45.28 CCC 1 GGG 18.36 G



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