Home | tRNADB-CE : tRNA gene database curated manually by experts

Composite table

Viridiplantae


[Important Notice]
This table can browse both anticodon number and codon usage concurrently.
When you consider the correlation of codon usage with anticodon number (i.e., number of tRNA genes having the respective anticodon), you have to pay attention to "wobble pairing" between the codon third position and the anticodon first position. For example, G base at the anticodon first position can pair with either U or C at the codon third position, and thus one anticodon can recognize two codons. U at the anticodon first position can pair with either A or G at the codon third position, and thus the anticodon also can recognize two codons. Furthermore, there exist the cases where the anticodon first position is enzymatically modified resulting in change of the codon recognition pattern.
Number of tRNA genes / Codon usage (permillage)
T C A G
AA anti
codon
tRNA codon usage AA anti
codon
tRNA codon usage AA anti
codon
tRNA codon usage AA anti
codon
tRNA codon usage
T phe AAA 0 TTT 38.21 Ser AGA 0 TCT 22.03 Tyr ATA 2 TAT 28.71 Cys ACA 0 TGT 8.49 T
GAA 105 TTC 18.93 GGA 95 TCC 11.34 GTA 105 TAC 7.61 GCA 102 TGC 2.98 C
Leu TAA 100 TTA 37.39 TGA 103 TCA 15.76 ochre TTA 2 TAA 2.27 opal Sec TCA 0 TGA 0.83 A
CAA 179 TTG 19.80 CGA 7 TCG 6.92 amber CTA 0 TAG 1.00 Trp CCA 107 TGG 17.05 G
C Leu AAG 0 CTT 22.06 Pro AGG 1 CCT 16.54 His ATG 0 CAT 17.06 Arg ACG 192 CGT 14.27 T
GAG 7 CTC 6.79 GGG 11 CCC 7.55 GTG 124 CAC 5.76 GCG 0 CGC 4.09 C
TAG 103 CTA 13.76 TGG 104 CCA 12.80 Gln TTG 105 CAA 28.49 TCG 0 CGA 12.78 A
CAG 0 CTG 6.44 CGG 0 CCG 5.09 CTG 0 CAG 7.98 CCG 17 CGG 4.11 G
A Ile AAT 0 ATT 42.51 Thr AGT 0 ACT 21.00 Asn ATT 0 AAT 37.01 Ser ACT 0 AGT 15.41 T
GAT 190 ATC 15.44 GGT 91 ACC 8.71 GTT 193 AAC 11.44 GCT 106 AGC 4.86 C
TAT 0 ATA 25.05 TGT 103 ACA 16.52 Lys TTT 99 AAA 43.61 Arg TCT 102 AGA 17.50 A
Met CAT 390 ATG 23.21 CGT 0 ACG 5.49 CTT 0 AAG 13.26 CCT 2 AGG 5.97 G
G Val AAC 0 GTT 20.67 Ala AGC 0 GCT 25.02 Asp ATC 0 GAT 31.38 Gly ACC 0 GGT 23.28 T
GAC 177 GTC 6.41 GGC 2 GCC 7.87 GTC 104 GAC 8.06 GCC 102 GGC 6.75 C
TAC 89 GTA 20.15 TGC 193 GCA 16.42 Glu TTC 108 GAA 39.57 TCC 65 GGA 26.09 A
CAC 0 GTG 7.49 CGC 0 GCG 5.61 CTC 0 GAG 12.77 CCC 0 GGG 10.59 G



BACK