Home | tRNADB-CE : tRNA gene database curated manually by experts

Composite table

stramenopiles


[Important Notice]
This table can browse both anticodon number and codon usage concurrently.
When you consider the correlation of codon usage with anticodon number (i.e., number of tRNA genes having the respective anticodon), you have to pay attention to "wobble pairing" between the codon third position and the anticodon first position. For example, G base at the anticodon first position can pair with either U or C at the codon third position, and thus one anticodon can recognize two codons. U at the anticodon first position can pair with either A or G at the codon third position, and thus the anticodon also can recognize two codons. Furthermore, there exist the cases where the anticodon first position is enzymatically modified resulting in change of the codon recognition pattern.
Number of tRNA genes / Codon usage (permillage)
T C A G
AA anti
codon
tRNA codon usage AA anti
codon
tRNA codon usage AA anti
codon
tRNA codon usage AA anti
codon
tRNA codon usage
T phe AAA 0 TTT 36.54 Ser AGA 0 TCT 15.12 Tyr ATA 0 TAT 26.12 Cys ACA 0 TGT 7.37 T
GAA 3 TTC 11.37 GGA 0 TCC 2.11 GTA 3 TAC 7.92 GCA 3 TGC 1.12 C
Leu TAA 3 TTA 77.75 TGA 3 TCA 21.97 ochre TTA 0 TAA 3.90 opal Sec TCA 0 TGA 0.17 A
CAA 0 TTG 7.04 CGA 0 TCG 4.61 amber CTA 0 TAG 0.37 Trp CCA 3 TGG 12.01 G
C Leu AAG 0 CTT 12.57 Pro AGG 0 CCT 13.10 His ATG 0 CAT 12.36 Arg ACG 3 CGT 19.38 T
GAG 0 CTC 1.09 GGG 0 CCC 2.10 GTG 3 CAC 3.26 GCG 0 CGC 3.20 C
TAG 4 CTA 9.11 TGG 6 CCA 19.24 Gln TTG 3 CAA 34.30 TCG 0 CGA 12.40 A
CAG 0 CTG 1.47 CGG 0 CCG 3.38 CTG 0 CAG 4.04 CCG 3 CGG 2.24 G
A Ile AAT 0 ATT 63.93 Thr AGT 0 ACT 20.73 Asn ATT 0 AAT 44.50 Ser ACT 0 AGT 17.70 T
GAT 6 ATC 10.53 GGT 0 ACC 3.24 GTT 3 AAC 10.44 GCT 3 AGC 3.12 C
TAT 0 ATA 13.85 TGT 3 ACA 28.44 Lys TTT 3 AAA 62.42 Arg TCT 3 AGA 10.07 A
Met CAT 9 ATG 19.80 CGT 0 ACG 5.73 CTT 0 AAG 8.14 CCT 0 AGG 0.90 G
G Val AAC 0 GTT 31.16 Ala AGC 0 GCT 26.05 Asp ATC 0 GAT 36.14 Gly ACC 0 GGT 35.85 T
GAC 0 GTC 3.60 GGC 0 GCC 4.17 GTC 3 GAC 5.84 GCC 3 GGC 5.45 C
TAC 3 GTA 21.54 TGC 6 GCA 26.84 Glu TTC 2 GAA 50.56 TCC 3 GGA 18.56 A
CAC 0 GTG 3.30 CGC 0 GCG 5.56 CTC 0 GAG 7.52 CCC 0 GGG 5.59 G



BACK